New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2650701 =	49 (0.970)	5 (0.100)	4/246	NT	9.1%	intergenic (‑77/‑103)	PP_mr32/PP_2323	P14 ncRNA/hypothetical protein
	?	NC_002947	2650737 =	53 (1.100)					intergenic (‑113/‑67)	PP_mr32/PP_2323	P14 ncRNA/hypothetical protein

AAAAAAAATGTTGCTTGACTCCGCGCCGACAAGATTTGCGACGTGTCTGTGAAAAAAATCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGATTACAAT  >  NC_002947/2650563‑2650848                                                                                                                                           |                                                                                                                                                    aaaaaaaaTGTTGCTTGACTCCGCGCCGACAAGATTTGCGACGTGTCTGTGAAAAAAATCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTAGAACTAAGCGTGACTTTAACTGTCGATAAGCGTCTTAAGCCCTAGTa                                                                                                                                           >  7:287677/1‑149 (MQ=255)       aaTGTTGCTTGACTCCGCGCCGACAAGATTTGCGACGTGTCTGTGAAAAAAATCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCg                                                                                                                                     <  8:187595/149‑1 (MQ=255)         cgcttcgaccattggacgattgtaatcgttcggatcgtctggcactgacaagatagtaggcaccgcaagcgggattgctcaaggtgctggcggttaaaaaaggctaaaccgccgcgtaggcgcctttcccAAGCgctagtacggggggg                                                                                                                                   <  4:179994‑M1/19‑8 (MQ=255)                tGACTCCGCGCCGACAAGATTTGCGACGTGTCTGTGAAAAAAATCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGtt                                                                                                                            >  5:23900/1‑149 (MQ=255)                tGACTCAGCGCCGACAAGATTTGCGACGTGTCTGTGAAAAAAATCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATAAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGtt                                                                                                                            >  5:19289/1‑149 (MQ=255)                       gcgcCGACAAGATTTGCGACGTGTCTGTGAAAAAAATCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTgggcggg                                                                                                                     >  4:241256/1‑149 (MQ=255)                           attgtaatcgttcggatcgtctggcactgacaagatagtaggcaccgcaagcgggattgctcaaggtgctggcggttaaaaaaggctaaaccgccgcctaggcgactttcccAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTg                                                                                                                 >  3:179994‑M1/113‑149 (MQ=255)                            ttgtaatcgttcggatcgtctggcactgacaagatagtaggcaccgcaagcgggattgctcaaggtgctggcggttaaaaaaggctaaaccgccgcctaggcgactttcccAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTgg                                                                                                                >  4:80593‑M1/112‑149 (MQ=255)                            gACAAGATTTGCGACGTGTCTGTGAAAAAAATCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAAGTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTTGGCGGGCTTgg                                                                                                                <  4:151573/149‑1 (MQ=255)                                 gATTTGCGACGTGTCTGTGAAAAAAATCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAg                                                                                                           >  6:105107/1‑149 (MQ=255)                                  tcgttcggatcgtctggcactgacaagatagtaggcaccgcaagcgggattgctcaaggtgctggcggttaaaaaaggctaaaccgccgcctaggcgactttcccAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTg                                                                                                                 >  3:274996‑M1/106‑142 (MQ=255)                                  tcgttcggatcgtctggcactgacaagatagtaggcaccgcaagcgggattgctcaaggtgctggcggttaaaaaaggctaaaccgccgcctaggcgactttcccAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTg                                                                                                                 <  4:274996‑M1/37‑1 (MQ=255)                                          gagctCTGTGAAAAAATTCTGCAGTGTTCGCTAGCGCTTGTGGTAGAGGAACTTTTTTGTTGTACTAAGGGTGAATTTATCTGTCGTTCAGCGTCTTAAGGCCTAGTACATCCGGTGTCTGTTGGGCGGGCTTGGGAAAGTCGCCTAgg                                                                                                  <  5:312018/145‑1 (MQ=255)                                           gtgtCTGTGAAAAAAATCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAggc                                                                                                 >  1:277005/1‑149 (MQ=255)                                                tgagAAAAAAATCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGAGTCTTAAGCCCTAGTACATCCCGTGGCTGTTGGGCGGGCTTGGGAAAGTCGACTAgg                                                                                                  >  6:312018/4‑143 (MQ=255)                                                    aaaaaaaTCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGttt                                                                                         <  2:277005/148‑1 (MQ=255)                                                     aaaaaaTCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTAGATCAGCGTCTTAAGCCCTAGTACATACGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCTGCGGTTTat                                                                                       >  5:147647/1‑148 (MQ=255)                                                              gCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCtttttt                                                                               >  2:240397/1‑148 (MQ=255)                                                              gCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCACTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCtttttt                                                                               >  4:66204/1‑148 (MQ=255)                                                               cAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAATCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCttttt                                                                                <  6:19289/146‑1 (MQ=255)                                                               cAGGGTGCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCttttt                                                                                <  6:23900/146‑1 (MQ=255)                                                                            ctgTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCtt                                                                <  5:329322/147‑1 (MQ=255)                                                                               ttGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAg                                                             <  2:104192/149‑1 (MQ=255)                                                                                 gtgGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGc                                                            >  2:314716/1‑148 (MQ=255)                                                                                   ggTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAAt                                                         >  1:313908/1‑149 (MQ=255)                                                                                    gTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAggcg                                                                                                <  3:303260/109‑1 (MQ=255)                                                                                    gTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAggcg                                                                                                >  4:303260/1‑109 (MQ=255)                                                                                    gTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATc                                                        >  3:256701/1‑149 (MQ=255)                                                                                    gTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATc                                                        >  7:109320/1‑149 (MQ=255)                                                                                      aCAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATccc                                                      >  6:37046/1‑149 (MQ=255)                                                                                             cTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCg                                               <  8:109320/149‑1 (MQ=255)                                                                                                ttttGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCTGt                                             <  1:240397/148‑1 (MQ=255)                                                                                                  ttgttgAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGc                                           <  2:108266/148‑1 (MQ=255)                                                                                                  ttgttgAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGc                                           <  1:314716/148‑1 (MQ=255)                                                                                                     ttgAACTACTGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCcta                                        <  8:287677/148‑1 (MQ=255)                                                                                                       gAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATccc                                                      <  5:23583/132‑1 (MQ=255)                                                                                                       gAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATccc                                                      >  6:23583/1‑132 (MQ=255)                                                                                                          cTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAg                                                             <  5:47233/122‑1 (MQ=255)                                                                                                          cTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAg                                                             >  6:47233/1‑122 (MQ=255)                                                                                                             aGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGt                               >  6:117258/1‑149 (MQ=255)                                                                                                             aGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCC‑TTTTTAACCGCCAGAACCTTGAg                                                             >  6:306086/1‑118 (MQ=255)                                                                                                              gggTGACTTTAACTGTCGATCAGCGTCTTAATCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGt                               <  6:147647/148‑1 (MQ=255)                                                                                                                     tttAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGt                           >  4:201621/1‑145 (MQ=255)                                                                                                                     tttAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGt                           <  3:201621/145‑1 (MQ=255)                                                                                                                           tGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTTCTATCTTGTCAGt                           >  4:237438/1‑139 (MQ=255)                                                                                                                           tGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTTCTATCTTGTCAGt                           >  4:233207/1‑139 (MQ=255)                                                                                                                           tGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTTCTATCTTGTCAGt                           <  3:237438/139‑1 (MQ=255)                                                                                                                           tGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTTCTATCTTGTCAGt                           <  3:233207/139‑1 (MQ=255)                                                                                                                            gTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATc                >  8:119903/1‑149 (MQ=255)                                                                                                                                  cAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAAc           >  4:187801/1‑148 (MQ=255)                                                                                                                                    gCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGAt        <  2:313908/149‑1 (MQ=255)                                                                                                                                    gCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGAt        <  3:66204/149‑1 (MQ=255)                                                                                                                                     cGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGAtt       <  5:105107/149‑1 (MQ=255)                                                                                                                                     cGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGAtt       <  7:119903/149‑1 (MQ=255)                                                                                                                                       tCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGATTAc     <  3:241256/149‑1 (MQ=255)                                                                                                                                        cTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGATTAc     >  1:259458/1‑148 (MQ=255)                                                                                                                                          tAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGATTACAAt  >  6:204485/1‑149 (MQ=255)                                                                                                                                           |                                                                                                                                                    AAAAAAAATGTTGCTTGACTCCGCGCCGACAAGATTTGCGACGTGTCTGTGAAAAAAATCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGATTACAAT  >  NC_002947/2650563‑2650848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.