New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3424404 =	43 (0.850)	3 (0.060)	3/246	NT	6.2%	coding (355/363 nt)	PP_3039	hypothetical protein
	?	NC_002947	3424455 =	49 (1.020)					intergenic (+43/‑469)	PP_3039/PP_3040	hypothetical protein/holin

GCTCTACCTGGTGGTTCGTGAGCACTACTGTAACGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTGC  >  NC_002947/3424259‑3424548                                                                                                                                                  |                                                                                                                                                  gtaaagagagagattaaaagcacgctgcgcgcaacgcgcgcgtgatgcgctgcacacgcctatgtgcgcgccttcgtgtgtacggtgggacggtgggacagcccgcgacctgcgcgggcttgagctaggctgacctgcatcaaacGCgg                                                                                                                                                <  8:44509‑M1/4‑1 (MQ=255)  taaagagagagattaacagcacgctgcgcgcaacgcgcgcgggatgcgctgcacacccctatgtgcgcgccttcgtgtgtacggtgggacggtgggacagcccgcgacctgcgcgcgcttgagctaggctgacctgcatcaaacGCGGc                                                                                                                                               >  4:237642‑M1/145‑149 (MQ=255)   aaagagagagattaaaagcacgctgcgcgcaacgcgcgcgtgatgcgctgcacacgcctatgtgcgcgccttcgtgtgtacggtgggacggtgggacagcccgcgacctgcgcgggcttgagctaggctgacctgcatcaaacGCGGc                                                                                                                                               >  8:123235‑M1/144‑148 (MQ=255)      aCCTGGTGGTTCGTGAGCACTACTGTAACGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑a                                                                                                                                          >  7:119557/1‑149 (MQ=255)           gtggtTCGTGAGCACTACTGTAACGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTc                                                                                                                                       <  3:25392/147‑1 (MQ=255)              gtTCGTGAGCACTACTGTAACGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCa                                                                                                                                   <  8:119557/148‑1 (MQ=255)                             tGTAACGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGt                                                                                                                   >  5:148528/1‑149 (MQ=255)                                        cAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGt                                                                                                        >  2:21949/1‑149 (MQ=255)                                                  tACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTg                                                                                                            <  8:293642/135‑1 (MQ=255)                                                  tACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTg                                                                                                            >  7:293642/1‑135 (MQ=255)                                                  ctgcacacgcctatgtgcgcgccttcgtgtgtacggtgggacggtgggacagcccgcgacctgcgcgggcttgagctaggctgacctgcatcaaacGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCcgc                                                                                                <  5:85573‑M1/51‑1 (MQ=255)                                                  ctgcacacgcctatgtgcgcgccttcgtgtgtacggtgggacggtgggacagcccgcgacctgcgcgggcttgagctaggctgacctgcatcaaacGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCcgc                                                                                                >  6:85573‑M1/97‑147 (MQ=255)                                                    ccAAAAGTACCGGCACAGTGGGTGTACCCGGGATACCTATTACAACCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTACTCTTGCGGCGAGCGGCATG‑ATTCGCCAt                                                                                                                                  >  3:106975/1‑111 (MQ=255)                                                      aaaaGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGa                                                                                          >  6:170357/1‑149 (MQ=255)                                                        acgcctatgtgcgcgccttcgtgtgtacggtgggacggtgggacagcccgcgacctgcgcgggcttgagctaggctgacctgcatcaaacGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTtgaag                                                                                        <  2:225669‑M1/59‑3 (MQ=255)                                                        aaGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATg                                                                                        <  5:170357/149‑1 (MQ=255)                                                           tACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAg                                                                                     >  2:256476/1‑149 (MQ=255)                                                            aCCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGCATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAg                                                                                     <  7:169246/148‑1 (MQ=255)                                                                    tgtgGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGcc                                                                              >  5:291094/1‑147 (MQ=255)                                                                      tgGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAg                                                                           <  6:178906/148‑1 (MQ=255)                                                                      tgGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGc                                                                          >  8:294689/1‑149 (MQ=255)                                                                          tgtAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCaa                                                                      <  1:256476/149‑1 (MQ=255)                                                                                cGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCcgc                                                                <  1:252234/149‑1 (MQ=255)                                                                                        cTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTc                                                                                                                          <  4:85115/83‑1 (MQ=255)                                                                                        cTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTc                                                                                                                          >  3:85115/1‑83 (MQ=255)                                                                                        cTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGa                                                                                          <  5:61959/115‑1 (MQ=255)                                                                                        cTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGa                                                                                          >  6:61959/1‑115 (MQ=255)                                                                                        cTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAg                                                                     >  8:1179/1‑136 (MQ=255)                                                                                        cTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTcg                                                        >  1:285848/1‑149 (MQ=255)                                                                                          aTTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGGTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTcgcg                                                      >  6:207013/1‑149 (MQ=255)                                                                                            tACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGACGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCggg                                                    >  4:256006/1‑149 (MQ=255)                                                                                             aCAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGc                                                   >  3:69837/1‑149 (MQ=255)                                                                                               aaGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTa                                                                            <  8:305292/122‑1 (MQ=255)                                                                                               aaGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTa                                                                            >  7:305292/1‑122 (MQ=255)                                                                                               aaGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTg                                                 >  6:214346/1‑149 (MQ=255)                                                                                               aaGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTg                                                 >  2:295751/1‑149 (MQ=255)                                                                                                 gcgcTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAg                                                                                     >  4:285410/1‑111 (MQ=255)                                                                                                 gcgcTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAg                                                                                     <  3:285410/111‑1 (MQ=255)                                                                                                       aCATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGAATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTgtcccacc                                          >  1:242031/1‑149 (MQ=255)                                                                                                       aCATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTgtcccaccg                                         >  7:44509/1‑149 (MQ=255)                                                                                                          tGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTgtcccaccgtcc                                      >  7:273146/1‑149 (MQ=255)                                                                                                           gAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACgg                                                                                                                            >  5:83299/1‑62 (MQ=255)                                                                                                           gAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACgg                                                                                                                            <  6:83299/62‑1 (MQ=255)                                                                                                              gcgcACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTgtcccaccgtcccacc                                  <  4:69837/149‑1 (MQ=255)                                                                                                                gcACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGtcccaccgtcccaccg                                 >  4:128881/1‑148 (MQ=255)                                                                                                                                ggCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGgcgcgc                <  2:242031/149‑1 (MQ=255)                                                                                                                                      ctctTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAg          <  6:291094/149‑1 (MQ=255)                                                                                                                                           ggggCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGc        <  5:214346/146‑1 (MQ=255)                                                                                                                                            gggCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCgtgt    >  7:152064/1‑149 (MQ=255)                                                                                                                                              gCGAGCGGCATG‑ATTCGCCATCCACGGTCCNACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTGc  >  1:27712/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                  GCTCTACCTGGTGGTTCGTGAGCACTACTGTAACGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATG‑ATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTGC  >  NC_002947/3424259‑3424548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.