New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3624077 =	43 (0.850)	4 (0.080)	4/246	NT	8.7%	intergenic (‑25/+148)	PP_3194/PP_3195	hypothetical protein/hypothetical protein
	?	NC_002947	3624114 =	43 (0.900)					intergenic (‑62/+111)	PP_3194/PP_3195	hypothetical protein/hypothetical protein

GTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCG  >  NC_002947/3623929‑3624220                                                                                                                                                       |                                                                                                                                                gTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGggt                                                                                                                                                 >  8:295156/1‑149 (MQ=255) gTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGGCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGggt                                                                                                                                                 <  4:28595/149‑1 (MQ=255)   gCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGggtgg                                                                                                                                               <  7:295156/149‑1 (MQ=255)    ccTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGAGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGggtggt                                                                                                                                              >  3:98714/1‑149 (MQ=255)      gatcgccgaaacccttggcggccacacggcctgatcggcgctgccggccctggcttgggcggcgccgattggcgccgttctcgtttctgcgccagagagcgccaggtatcgatgccatcgatacctggccatcaatagcatctgctg                                                                                                                                                >  7:262433‑M1/146‑147 (MQ=255)      gatcgccgaaacccttggcggccacacggcctgatcggcgctgccggccctggcttgggcggcgccgattggcgccgttctcgtttctgcgccagagagcgccaggtatcgatgccatcgatacctggccatcaatagcatctgcTGGt                                                                                                                                              <  5:91490‑M1/4‑1 (MQ=255)        tcgccgaaacccttggcggccacacggcctgatcggcgctgccggccctggcttgggcggcgccgattggcgccgttctcgtttctgcgccagagagcgccaggtatcgatgccatcgatacctggccatcaatagcatctgcTGGTGc                                                                                                                                            <  3:95357‑M1/6‑1 (MQ=255)        ggcggTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCaa                                                                                                                                          <  2:118252/149‑1 (MQ=255)         cgccgaaacccttggcggccacacggcctgatcggcgctgccggccctggcttgggcggcgccgattggcgccgttctcgtttctgcgccagagagcgccaggtatcgatgccatcgatacctggccatcaatagcatctgcTGGTGc                                                                                                                                            >  7:129468‑M1/143‑148 (MQ=255)             ttGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAaggc                                                                                                                                       >  6:91490/1‑147 (MQ=255)                             gATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAATGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGcc                                                                                                                     >  5:266601/1‑149 (MQ=255)                                 ggcctgatcggcgctgccggccctggcttgggcggcgccgattggcgccgttctcgtttctgcgccagagagcgccaggtatcgatgccatcgatacctggccatcaatagcatctgcTGGTGCAAGGCTAGGCTGTGGCGACTGCCCg                                                                                                                   <  3:149601‑M1/31‑1 (MQ=255)                                  cGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCa                                                                                                                >  8:20220/1‑149 (MQ=255)                                  cGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCa                                                                                                                >  4:125880/1‑149 (MQ=255)                                  cGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGAGCAGGGAACTCATTGGGATAGGATCTCTCAAATAGGGGGTGGTGAAAGCCTAGCAGGTGGCGCCTCCCCgc                                                                                                                  >  1:103887/1‑148 (MQ=255)                                   gCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCAc                                                                                                               <  6:166992/149‑1 (MQ=255)                                          ggcgctgccggccctggcttgggcggcgccgattggcgccgttctcgtttctgcgccagagagcgccaggtatcgatgccatcgatacctggccatcaatagcatctgcTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACcagca                                                                                                          >  4:149601‑M1/110‑149 (MQ=255)                                           cGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGa                                                                                                        <  7:20220/148‑1 (MQ=255)                                           cGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGAt                                                                                                       >  2:48972/1‑149 (MQ=255)                                               gatCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTa                                                                                                   >  8:266071/1‑149 (MQ=255)                                                atCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTAt                                                                                                  >  1:46319/1‑149 (MQ=255)                                                   aaTGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTg                                                                                                <  2:46319/148‑1 (MQ=255)                                                     tgtctgtcGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATg                                                                                             <  3:125880/149‑1 (MQ=255)                                                       tctgtcGTTGGCGGGTGTGCAGGCCAATGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTGATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATgg                                                                                            <  6:266601/148‑1 (MQ=255)                                                          gtcGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGAt                                                                                              <  6:125988/143‑1 (MQ=255)                                                          gtcGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGAt                                                                                              >  5:125988/1‑143 (MQ=255)                                                              ttGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTAt                                                                                    >  1:56355/1‑149 (MQ=255)                                                                        tgCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCAt                                                                           <  4:24511/148‑1 (MQ=255)                                                                          cAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCg                                                                         <  2:56355/148‑1 (MQ=255)                                                                           aGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGa                                                                        >  2:44876/1‑148 (MQ=255)                                                                           aGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGCCATCGAt                                                                       <  7:266071/149‑1 (MQ=255)                                                                             gCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATAc                                                                     >  4:204939/1‑149 (MQ=255)                                                                              ctccgttctcgttgctgctccagagagcgccaggtatcgatgccatcgatacctggccatcaatagcatctgcTGGTGCAAGGCTAGGCTGTGGCGACTGCCCgg                                                                                                                  >  8:207577‑M1/74‑105 (MQ=255)                                                                              cgccgttctcgtttctgcgccagagagcgccaggtatcgatgccatcgatacctggccatcaatagcatctgcTGGTGAAAGGCTAGGCTGTGGCGACTGCCCgg                                                                                                                  <  7:207577‑M1/32‑1 (MQ=255)                                                                               cAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCt                                                                   >  8:13005/1‑149 (MQ=255)                                                                                    ccGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGgcgc                                                              >  1:161280/1‑149 (MQ=255)                                                                                        cGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCa                                                                                         <  5:316430/118‑1 (MQ=255)                                                                                        cGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCa                                                                                         >  6:316430/1‑118 (MQ=255)                                                                                            cAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCTGGTATCGATGGCATCGATACCTGGCGCTCTCTGgc                                                      <  1:48972/149‑1 (MQ=255)                                                                                            cAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGgc                                                      >  3:196555/1‑149 (MQ=255)                                                                                            cAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGgc                                                      <  7:13005/149‑1 (MQ=255)                                                                                                    aGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAAc                                              <  4:98714/149‑1 (MQ=255)                                                                                                      cAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACga                                            <  1:267135/149‑1 (MQ=255)                                                                                                           caggtgcaggGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACg                                       >  5:49223/1‑149 (MQ=255)                                                                                                                gcaggGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTg                                                                  <  1:37406/117‑1 (MQ=255)                                                                                                                gcaggGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTg                                                                  >  2:37406/1‑117 (MQ=255)                                                                                                                    ggCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATc                              <  3:204939/149‑1 (MQ=255)                                                                                                                       aCTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCGATTGgc                           >  4:55550/1‑149 (MQ=255)                                                                                                                          cATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGcgcc                        >  8:162484/1‑149 (MQ=255)                                                                                                                           aTTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCGATTGGcgccg                       <  3:55550/149‑1 (MQ=255)                                                                                                                           aTTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGgcgc                         <  4:196555/147‑1 (MQ=255)                                                                                                                                     gCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATCGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGcc               <  2:33971/149‑1 (MQ=255)                                                                                                                                           tcATCTTGGGTGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGcc         >  4:95357/1‑149 (MQ=255)                                                                                                                                           tcATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAACCGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGcc         >  8:21877/1‑149 (MQ=255)                                                                                                                                           tcATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGcc         >  4:184039/1‑149 (MQ=255)                                                                                                                                                  gggggTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGAATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCcgcg  >  4:185081/1‑149 (MQ=255)                                                                                                                                                       |                                                                                                                                                GTGCCTCGGCGGTTGGCCCGACATGGCGGATCACGCCGTCTTCGATGATCAATGTCTGTCGTTGGCGGGTGTGCAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGG‑‑TGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCG  >  NC_002947/3623929‑3624220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.