New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4808179	0 (0.000)	19 (0.420)	17/234	NT	44.2%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5988765 =	48 (1.050)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

GGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCT‑GAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACA  >  NC_002947/4808034‑4808322                                                                                                                                                  |                                                                                                                                                 ggCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGTAGGCTGTCAGCGCCTGGGAGGTGTTCGCCGGGTGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAACCCCTGGGAGATCGAGCGCCGCCCGCGcgg                                                                                                                                               <  1:182207‑M1/149‑4 (MQ=255)   gtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAgcg                                                                                                                                             <  1:257080‑M1/11‑1 (MQ=255)    tttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAgcgc                                                                                                                                            <  8:213920‑M1/12‑1 (MQ=255)          cGGAATTCGCGCTTTGGCGGGTTGGGGTTTGGCGGGAGGTTTGCAGCGGCGGGGAGGTGTTCGCCGGGCGAGTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGTCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcg                                                                                                                                      <  1:54049‑M1/149‑13 (MQ=255)           gccagttattactgtgggacgcgcacgcgagcacctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCgcgg                                                                                                                                     <  5:145865‑M1/19‑1 (MQ=255)               ttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCccgcgcgg                                                                                                                                 <  5:194823‑M1/23‑1 (MQ=255)                 cgcgCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTCTTCGCCGGGGGAGTTTCAGCTGCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGGCTGGGAGATCGAGCGCCGAACGCGcggcgcttcgcgggtaaa                                                                                                                                >  5:216985‑M1/1‑130 (MQ=255)                 attcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCCCGcgcggc                                                                                                                                >  6:194823‑M1/125‑148 (MQ=255)                    cctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTc                                                                                                                            <  8:268498‑M1/28‑1 (MQ=255)                     ctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTc                                                                                                                            <  4:170588‑M1/28‑1 (MQ=255)                      tttCGCGGTTAGGTGTTTTGCGTCAGGTTCTCTGCGGCTGGTAGGTGTTCGGCGGGTGTTTTTCAGCGCCGGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccg                                                                                                                            <  1:238616‑M1/147‑23 (MQ=255)                       gtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggcccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGggcggcgcccaa                                                                                                                          <  8:199455‑M1/30‑5 (MQ=255)                        tgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGAtc                                                                                                                        >  7:268498‑M1/118‑149 (MQ=255)                                aGGTGTTTGGCGGGATGTCTACATCGCCTGGGAGGTGTTCGGCGGGGGACTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttg                                                                                                                <  5:172038‑M1/149‑35 (MQ=255)                                     gcgaccgccttggggcatgtctcgatatcgtgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCT‑g                                                                                                           <  2:77157‑M1/44‑1 (MQ=255)                                         ccgccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCT‑GAAAAt                                                                                                      <  2:99675‑M1/49‑1 (MQ=255)                                           gggAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaaaccgctcctacgtttgtttcgggccaa                                                                                                     <  1:8535‑M1/149‑46 (MQ=255)                                            ccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCT‑GAAAAtcct                                                                                                   <  8:165176‑M1/52‑1 (MQ=255)                                            cctggcgcacgcctcgatatcgcgtcgtactaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCTCGGGCGGCGCTCGAtctc                                                                                                                      <  1:26682‑M1/34‑1 (MQ=255)                                            cctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCTCGGGCGGCGCTCGAtctc                                                                                                                      >  2:26682‑M1/98‑131 (MQ=255)                                            cctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGgcggcg                                                                                                                               <  1:126470‑M1/25‑1 (MQ=255)                                                ggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCT‑GAAAATCCTCCg                                                                                                >  2:98083‑M1/94‑148 (MQ=255)                                                ggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCT‑GAAAATCCTCCg                                                                                                <  1:98083‑M1/55‑1 (MQ=255)                                                gcgcacgcctcgatatcgcgtcctacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCt                                                                                                                             >  5:60253‑M1/94‑120 (MQ=255)                                                gcgcacgcctcgatatcgcgtcatacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCt                                                                                                                             <  6:60253‑M1/27‑1 (MQ=255)                                                    tCAGCGCCGGGGAGGGGTTCTCCGGGGGATTTTCAGCGCCCGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcct                                                                                             <  7:247108‑M1/148‑54 (MQ=255)                                                        tctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggggcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCcgcgcg                                                                                                                                      >  8:114096‑M1/86‑103 (MQ=255)                                                          cgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGAtc                                                                                                                        <  7:80732‑M1/32‑1 (MQ=255)                                                          cgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGAtc                                                                                                                        >  8:80732‑M1/84‑115 (MQ=255)                                                                 cgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCT‑GAAAATCCTCCGGCAAACACCTCAAAATTc                                                                              <  6:294408‑M1/73‑1 (MQ=255)                                                                        tacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCT‑GAAAATCCTCCGGCAAACACCTCAAAATTCCAACGcc                                                                       <  6:129029‑M1/80‑1 (MQ=255)                                                                             acaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCT‑GAAAATCCTCCGGCAAACAGCTCAAAATTCCAACCCCGTCCa                                                                  <  7:279534‑M1/85‑1 (MQ=255)                                                                                    ggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCT‑GAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCaaaa                                                           >  5:129029‑M1/58‑149 (MQ=255)                                                                                       gcgcCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctc                                                         >  6:63566‑M1/1‑60 (MQ=255)                                                                                        gcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCT‑GAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTc                                                        <  6:310726‑M1/95‑1 (MQ=255)                                                                                        cgcCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcg                                                        <  5:63566‑M1/149‑91 (MQ=255)                                                                                         cgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCT‑GAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTcc                                                       <  4:133867‑M1/96‑1 (MQ=255)                                                                                            tGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatat                                                    >  4:170730‑M1/1‑55 (MQ=255)                                                                                                ctggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCT‑GAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgccgc                                               <  3:192774‑M1/104‑1 (MQ=255)                                                                                                      tCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgta                                           >  1:2050‑M1/1‑45 (MQ=255)                                                                                                       cGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatc                                                   <  5:218927‑M1/139‑96 (MQ=255)                                                                                                       cGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatc                                                   >  6:218927‑M1/1‑44 (MQ=255)                                                                                                          ccgctctgtttcagcGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaa                                       <  7:210590‑M1/141‑108 (MQ=255)                                                                                                              agagTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaagg                                  <  3:170730‑M1/149‑113 (MQ=255)                                                                                                              actggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCT‑GAAAATCCTCCGGCAAACACCTCAAAATTCCAAGGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTc                                  <  5:277137‑M1/117‑1 (MQ=255)                                                                                                                tggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCT‑GAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgccgc                                               <  8:194138‑M1/104‑1 (MQ=255)                                                                                                                tggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCT‑GAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgccgc                                               >  7:194138‑M1/30‑133 (MQ=255)                                                                                                                 gTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaaggcgg                               <  5:67622‑M1/149‑116 (MQ=255)                                                                                                                  tttCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaa                                       >  8:210590‑M1/1‑33 (MQ=255)                                                                                                                         gcCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgc                       <  2:62655‑M1/149‑124 (MQ=255)                                                                                                                           ccatgagatcgaGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgc                     >  4:283943‑M1/5‑24 (MQ=255)                                                                                                                           aacgttggagcgggtttcCCCGCGAAGCGCCGCGCGGGCGTAGCTCGATCTCACAGGCGCT‑GAAAATCCTCCGTCAAACACCTCAAAATACCAACGCCTTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTccc                    >  8:279534‑M1/19‑149 (MQ=255)                                                                                                                            acgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTAGGAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTccc                    <  1:92578‑M1/132‑1 (MQ=255)                                                                                                                             cgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCT‑GAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCt                  >  5:310726‑M1/17‑149 (MQ=255)                                                                                                                                agaTCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctgg                 <  3:283943‑M1/148‑130 (MQ=255)                                                                                                                                   agcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCT‑GAAAATCCTCCGGCAAACAGCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCGCTCAAAATTCCTACGCCGCGTCCCCTCGaaa             >  2:92237‑M1/11‑148 (MQ=255)                                                                                                                                    cGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaa                                    >  2:152138‑M1/1‑15 (MQ=255)                                                                                                                                    cGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaa                                    <  1:152138‑M1/125‑111 (MQ=255)                                                                                                                                        gtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCT‑GAAAATCCTCCGGCAAACACCTCAAAATTGCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCcaa       >  1:99675‑M1/6‑149 (MQ=255)                                                                                                                                        gtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCT‑GAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCcaa       >  1:77157‑M1/6‑149 (MQ=255)                                                                                                                                             CCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCT‑GAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCcaacaac   >  4:192774‑M1/1‑148 (MQ=255)                                                                                                                                              ccgcGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattgg  <  6:48666‑M1/149‑145 (MQ=255)                                                                                                                                                  |                                                                                                                                                 GGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCT‑GAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACA  >  NC_002947/4808034‑4808322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.