| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4896398 | 20 (0.400) | 7 (0.170) | 9/216 | NT | 31.3% | intergenic (+31/‑177) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| ? | NC_002947 | = 4896445 | 14 (0.330) | intergenic (+78/‑130) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein | |||||
CCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCC > NC_002947/4896255‑4896546 | ccATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGTGCC‑GGCCTCTTCGCGGGTAAAcccgc > 2:319028‑M1/1‑144 (MQ=255)ccATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAATCCGc > 7:186547/1‑149 (MQ=255) gCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGC‑GGCGGTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAATCCGCTcc > 8:253164/1‑148 (MQ=255) acgttgcgtccttgttcttgaagggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgcGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGcgcg < 3:176819‑M1/39‑1 (MQ=255) gtccttgttcttgaagggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGCGGACCGTg < 7:117620‑M1/46‑1 (MQ=255) caTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGC‑GGCGTTCTGTTCTCTCTGTGGGAATGTGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTAGCGGGTAATTACCCTACAACAGGCGCTGGCCGTgcgc > 5:228533/1‑149 (MQ=255) caTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTgcgc > 7:108197/1‑149 (MQ=255) aTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGcgcg < 8:108197/149‑1 (MQ=255) gATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGTGCC‑GGCCTCTTCGCGGGTAAAcccgctcctacgggggaccgcgcacggtccg > 8:570‑M1/1‑118 (MQ=255) gCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTcc‑‑‑c < 8:264064/148‑1 (MQ=255) gACCTGCCACAAGAAGACCCACGAGCAGGGGGC‑GGCGAGCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAAtccgctcctacgggggaccgcgcacggtccgcgcctgta < 5:306220‑M1/149‑40 (MQ=255) aagggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCg > 8:117620‑M1/91‑148 (MQ=255) aCCTGCCACAAGAAGACCCACGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGTGCC‑GGCCTCTTCGCGGGTAAAcccgctcctacgggggaccgcgcacggtccgcgcctgtag < 7:570‑M1/149‑41 (MQ=255) ccTGCCACAAGAAGACCCACGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAgg < 4:145464/149‑1 (MQ=255) cacaAGAAGTCCCACGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGGGCCTGCGCC‑GGCCTCTTCGCGGGTAAAcccgctccttcgggggacctcgcacggtccgcgcctgtaggagcgg < 6:258367‑M1/149‑47 (MQ=255) cacaAGAAGACCCACGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGCCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCgg < 7:253164/149‑1 (MQ=255) acaAGAAGACCCACGAGCAGGGGGCGGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAAtccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcg > 1:168079‑M1/1‑103 (MQ=255) acaAGAAGACCCACGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAAtccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcgga < 2:168079‑M1/149‑48 (MQ=255) agaagaCCCACGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGttt > 8:186547‑M2/1‑146 (MQ=255) aagaCCCACGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGTGCC‑GGCCTCTTCGCGGGTAAAcccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcggatttac < 1:319028‑M1/149‑53 (MQ=255) agaCCCACGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAAc < 8:152291‑M1/97‑2 (MQ=255) agaCCCACGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAAc > 7:152291‑M1/1‑96 (MQ=255) ccACGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACGGG‑‑‑GGACCGCGCACGGTCCGCGCCTGTAGGAGCGGAtttacccgc < 5:1442‑M2/148‑10 (MQ=255) cACGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGGCCAATTCCCGGGTAAAACCCGACAAACCGGCCCGGACCGTGCCCGGACC‑‑‑CCCGTAGGAGCGGGTTTAccccc > 2:223560/1‑146 (MQ=255) cGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGa < 7:96086/109‑1 (MQ=255) cGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGa > 8:96086/1‑109 (MQ=255) cGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCggg > 7:174384/1‑136 (MQ=255) cGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCggg < 8:174384/136‑1 (MQ=255) cGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACGGG‑‑‑GGACCGCGCACGGTCCGCGCCTGTAGGAGCGGAtttacccgcgaag > 6:1442‑M2/1‑136 (MQ=255) gcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgcGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAaga > 4:176819‑M1/68‑149 (MQ=255) gggggC‑GGCGTTCTGTTCGCGCTGGGGCAAGGGGTTGTTCCCCAAAGCGTGATAGCGCCTGCGCG‑GGCCTCTTGGCGGGTAAATCCGCTCCTACCGGCGGGGACGGTGCGCGTTCC‑‑‑CCCTTTGGAGCGGGTTTACCCGCGAAGAGGCCg < 2:308491/149‑1 (MQ=37) ctataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTAc < 8:169467‑M1/73‑1 (MQ=255) ctataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTAc > 7:169467‑M1/64‑136 (MQ=255) taacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGaa > 8:31902‑M1/61‑140 (MQ=255) taacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGaa < 7:31902‑M1/80‑1 (MQ=255) taacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCC‑GCCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCg > 2:99861‑M1/61‑147 (MQ=255) ttctgttctCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCACTTAGCGGGTAAATCCGCTCCTAAAGGCGCGGACCGGGCGCGGTGC‑‑‑CCCGTAGGAGCGGGTTTAACCGCGAAGAGACCGGCACAgg > 1:269850/1‑146 (MQ=255) ctgttctCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGttt > 8:35444‑M2/1‑118 (MQ=255) ctgttctCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGttt < 7:35444‑M2/121‑4 (MQ=255) gttctCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACTGGCGCGGACCGTGCGCGGGCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaagaggccggc > 6:251500‑M2/1‑116 (MQ=255) gttctCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaagaggccggc < 5:251500‑M2/137‑22 (MQ=255) aaTGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCACATAGCCGGTAAATACGCTACAAAACGCCCGGACCCTGCCCGGTCC‑‑‑CCCCTACGAGCGGGTTTAACCCCCAAGAGGCCGGCACAAGCAAAAGC‑AAAACCAAAACaat > 6:297037/1‑147 (MQ=255) tcgcAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCtt < 5:297037/145‑1 (MQ=255) ccAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGttta < 5:305389‑M2/93‑5 (MQ=255) ccAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGttta > 6:305389‑M2/1‑89 (MQ=255) cAAAGCGTGATAGCGCCTGCGCC‑GGCCTAATAGCGGGTAAAAACCCACCAACAGGGGCGGGCCCGGGGCGGTGC‑‑‑CCCGGATGGGCGGGGTTTACAGCCAAAAGGCCCGCACAAAGAGAAGCAAAAACCAAAAAATtttttttttata > 8:14087/1‑143 (MQ=255) cAAAGCGGTATAGCGCCTGAGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGCCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGTAGCGGGTTTACCCGCTAAGAGGCCGGCACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTc < 7:14087/143‑1 (MQ=38) aaaGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAAcc > 7:164824/1‑149 (MQ=255) cgcC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGt < 1:223560/148‑1 (MQ=255) gcC‑GGCCTCTTCGCGGGTAAAcccgctcctacgggggcccgcgcacggtccgcgccagtaggagcggatttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaac > 6:251500‑M1/1‑21 (MQ=255) gcC‑GGCCTCTTCGCGGGTAAAcccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcggatttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaac < 5:251500‑M1/137‑117 (MQ=255) GCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAGCCCGTAATAACCCACGCGTTATAGt < 5:267789‑M1/149‑1 (MQ=255) ctTCGCGGGTAAAtccgctcctacaggcgcggaccgtgcgcggtcccccgtaggagcgggtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcg > 6:1442‑M1/1‑13 (MQ=255) gcgGGTAAAtccgctcctacaggcgcggaccgtgcgcggtcccccgtaggagcgggtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgg < 5:1442‑M1/148‑140 (MQ=255) gTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaagaggccggcacaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtctt < 1:319028‑M2/149‑98 (MQ=255) tAAAcccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcggatttacccgcgaagaggccggcgcaggcgctatcacgctttgg > 6:305389‑M1/1‑4 (MQ=255) tAAAcccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcggatttacccgcgaagaggccggcgcaggcgctatcacgctttgg < 5:305389‑M1/93‑90 (MQ=255) aaacccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcggatttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttct > 8:186547‑M1/1‑3 (MQ=255) aaacccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcggatttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacag < 7:35444‑M1/121‑119 (MQ=255) aaacccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcggatttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacag > 8:35444‑M1/1‑3 (MQ=255) ATCCGCTCCTACAGGCGCTGACCGTTCGCGGTCC‑‑‑CCCGTAGTAGCGGGTTTACCCGCGAAGAGGCCGTCACAGGCAGAAGC‑ATAACCAAACCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGccc > 6:228533‑M1/1‑149 (MQ=255) | CCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGC‑GGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCC‑GGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCC > NC_002947/4896255‑4896546 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |