New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 232096	50 (0.990)	5 (0.110)	4/242	NT	9.5%	coding (195/1911 nt)	PP_0180	cytochrome c family protein
	?	NC_002947	= 232114	48 (1.020)					coding (213/1911 nt)	PP_0180	cytochrome c family protein

CAGCACCTTGGCGCTGGCCGAGTCCCCCGCCGAGGCTGCCAAAGCCCAGCACTTGCTGGACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAGGGCGTCCAGGCGCTGCGCCAGGCCATCGACCAGCGTCAGGAAGGTACTGCGGTCGCCAAACAGGCCCGGCAGCTGGGTGC  >  NC_002947/231970‑232257                                                                                                                                                 |                                                                                                                                                cagcaCCTTGGCGCTGGCCGAGTCCCCCGCCGAGGCTGCCAAAGCCCAGCACTTGCTGGACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTgcg                                                                                                                                              >  6:170995‑M2/1‑145 (MQ=255)         tGGCGCTGGCCGAGTCCCCCGCCGAGGCTGCCAAAGCCCAGCACTTGCTGGACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGcg                                                                                                                                     <  8:182224/149‑2 (MQ=255)             gcTGGCCGAGTCCCCCGCCGAGGCTGCCAAAGCCCAGCACTTGCTGGACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTCCGGTATTGGCTGAcc                                                                                                                                 >  2:293548/1‑149 (MQ=255)                ggCCGAGTCCCCCGCCGAGGCTGCCAAAGCCCAGCACTTGCTGGACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTgg                                                                                                                              >  6:76911/1‑149 (MQ=255)                 gCCGAGTCCCCCGCCGAGGCTGCCAAAGCCCAGCACTTGCTGGACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGt                                                                                                                             <  5:270448/149‑1 (MQ=255)                 gCCGAGTCCCCCGCCGAGGCTGCCAAAACCCAGCACTTGCTGGACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGt                                                                                                                             >  1:278847/1‑149 (MQ=255)                 gCCGAGTCCCCCGCCGAGGCTGCCAAAACCCAGCACTTGCTGGACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGt                                                                                                                             <  2:278847/149‑1 (MQ=255)                  ccGAGTCCCCCGCCGAGGCTGCCAAAGCCCAGCACTTGCTGGACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGt                                                                                                                             >  7:143949/1‑148 (MQ=255)                      gTCCCCCGCCGAGGCTGCCAAAGCCCAGCACTTGCTGGACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAg                                                                                                                        <  5:111226/149‑1 (MQ=255)                      gTCCCCCGCCGAGGCTGCCAAAGCCCAGCACTTGCTGGACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAg                                                                                                                        <  4:139354/149‑1 (MQ=255)                          cccGCCGAGGCGGCCAAAGCCCAGCACTTGCTGGACTACATTGGGGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCt                                                                                                                    <  8:59961/149‑1 (MQ=255)                           ccgccgAGGCTGCCAAAGCCCAGCACTTGCTGGACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTg                                                                                                                   >  7:260261/1‑149 (MQ=255)                                gAGGCTGCCAAAGCCCAGCACTTGCTGGACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGc                                                                                                              <  7:29618/149‑1 (MQ=255)                                       ccAAAGCCCAGCACTTGCTGGACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACt                                                                                                       >  8:145839/1‑149 (MQ=255)                                         aaaGCCCAGCACTTGCTGGACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTg                                                                                                      >  3:101578/1‑148 (MQ=255)                                          aaGCCCAGCACTTGCTGGACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGaa                                                                                                    <  8:260261/149‑1 (MQ=255)                                            gCCCAGCACTTGCTGGACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAAc                                                                                                   >  4:90529/1‑148 (MQ=255)                                                  cACTTGCTGGACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGc                                                                                            <  4:101578/149‑1 (MQ=255)                                                        cTGGACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTgg                                                                                       <  1:293548/148‑1 (MQ=255)                                                           gACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGc                                                                                                                  >  6:137976/1‑118 (MQ=255)                                                           gACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGc                                                                                                                  <  5:137976/118‑1 (MQ=255)                                                           gACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACa                                                                                   <  6:875/149‑1 (MQ=255)                                                           gACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCGTTGGaa                                                                                     >  7:99480/1‑147 (MQ=255)                                                            aCTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAg                                                                                  >  5:161510/1‑149 (MQ=255)                                                                cATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCt                                                                                                                    <  3:113742/111‑1 (MQ=255)                                                                cATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCt                                                                                                                    >  4:113742/1‑111 (MQ=255)                                                                 aTTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTTACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAGGGCGt                                                                             >  4:185111/1‑149 (MQ=255)                                                                     gTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAGGGCGTCCa                                                                          <  7:145839/148‑1 (MQ=255)                                                                               cccGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCATATACTGAACAAGCGGCttt                                                                                         >  3:175600/1‑123 (MQ=255)                                                                               cccGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCACATACTGAACAAGCGGCttt                                                                                         <  4:175600/123‑1 (MQ=255)                                                                               cccGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAGGGCGTCCAGGCGCTgcgc                                                                >  3:64924/1‑148 (MQ=255)                                                                                ccgccgACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAGGGCGTCCAgg                                                                        >  5:116162/1‑139 (MQ=255)                                                                                ccgccgACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAGGGCGTCCAgg                                                                        <  6:116162/139‑1 (MQ=255)                                                                                ccgccgACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAGGGCGTCCAGGCGCTGCGCCa                                                              <  4:64924/149‑1 (MQ=255)                                                                                   ccgACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAGGGCGTCCAGGCGCTGCGCCAGGc                                                           >  3:9631/1‑149 (MQ=255)                                                                                                     aaGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCCAATACTGAACAAGCGGCTTTGGAACAGGGCGTCCAGGCGCTGCGCCAGGCCATCGACCAGCGTCAgg                                          >  7:215994/1‑148 (MQ=255)                                                                                                       ggTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAGTGCGTCCAGGCGCTGCGCCAGGCCATCGACCAGCGTCAGGAAg                                       <  4:9631/149‑1 (MQ=255)                                                                                                           aTCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAGGGCGTCCAGGCGCTGCGCCAGGCCATCGACCAGCGTCAGGAAGGTa                                    <  3:185111/148‑1 (MQ=255)                                                                                                           aTCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAGGGCGTCCAGGCGCTGCGCCAGGCCATCGACCAGCGTCAGGAAGGTAc                                   >  6:111124/1‑149 (MQ=255)                                                                                                            tCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAGGGCGTCCAGGCGCTGCGCCAGGCCATCGACCAGCGTCAGGaa                                        >  3:87006/1‑143 (MQ=255)                                                                                                            tCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAGGGCGTCCAGGCGCTGCGCCAGGCCATCGACCAGCGTCAGGaa                                        <  4:87006/143‑1 (MQ=255)                                                                                                                      cGAATACCGCGAGCAACAGGAGTTCAGTgcggtattcgccctcgtcgatcaccttgccgtcctgcacggtcggcgggtagtcggcaccaatgtagtccagcaagtgctgggctttggcagcctcggcgggggactcggccagcgccaag                        <  7:40552‑M2/149‑122 (MQ=255)                                                                                                                      cGAATACCGCGAGCAACAGGAGTTCAGTgcggtattcgccctcgtcgatcaccttgccgtcctgcacggtcggcgggtagtcggcaccaatgtagtccagcaagtgctgggctttg                                                         >  8:16994‑M2/1‑28 (MQ=255)                                                                                                                      cGAATACCGCGAGCAACAGGAGTTCAGTgcggtattcgccctcgtcgatcaccttgccgtcctgcacggtcggcgggtagtcggcaccaatgtagtccagcaagtgctgggctttg                                                         <  7:16994‑M2/116‑89 (MQ=255)                                                                                                                       gAATACCGCGAGCAACAGGAGTTCAGTgcggtattcgccctcgtcgatcaccttgccgtcctgcacggtcggcgggtagtcggcaccaatgtagtccagcaagtgctgggctttggcagcctcggcggg                                           >  2:188207‑M2/1‑27 (MQ=255)                                                                                                                       gAATACCGCGAGCAACAGGAGTTCAGTgcagtattcgccctcgtcgatcaccttgccgtcctgcacggtcggcgggtagtcggcaccaatgtagtccagcaagtgctgggctttggcagcctcggcggg                                           <  1:188207‑M2/129‑103 (MQ=255)                                                                                                                        aaTACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAGGGCGTCCAGGCGCTGCGCCAGGCCATCGACCAGCGTCa                                            <  5:18340/127‑1 (MQ=255)                                                                                                                        aaTACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAGGGCGTCCAGGCGCTGCGCCAGGCCATCGACCAGCGTCa                                            >  6:18340/1‑127 (MQ=255)                                                                                                                         aTACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAGGGCGTCCAGGCGCTGCGCCAGGCCATCGACCAGCGTCAGGAAGGTACTGCGGTCGCCAAAc                     <  5:111124/149‑1 (MQ=255)                                                                                                                         aTACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAGGGCGTCCAGGCGCTGCGCCAGGCCATCGACCAGCGTCAGGAAGGTACTGCGGTCGCCAAAc                     <  8:143949/149‑1 (MQ=255)                                                                                                                             cgcgAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAGGGCGTCCAGGCGCTGCGCCAGGCCATCGACCAGCGTCAGGAAGGTACTGCGGTCGCCAAACAGGc                 >  6:89372/1‑149 (MQ=255)                                                                                                                             cccgAGCAACACGAGTTCAGAGCGGTATTCGCTGACATCGTCAAAGCCCAGCCCGCAAAAAATGAACAAGCCCCATTCGAACAGGACGTCCAGGCCCTGCTCCAGGCCATCCACCACCCTCAGGAAGGTACTGCGGTCGCCAAACAGGc                 >  2:87112/3‑149 (MQ=255)                                                                                                                                  gCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAGGGCGTCCAGGCGCTGCGCCAGGCCATCGACCAGCGTCAGGAAGGTACTGCGGTCGCCAAACAGGCCCgg             >  2:251222/1‑148 (MQ=255)                                                                                                                                    aaCAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAGGGCGTCCAGGCGCTGCGCCAGGCCATCGACCAGCGTCAGGAAGGTACTGCGGTCGCCAAACAGGCCCGGCAg          >  3:46411/1‑149 (MQ=255)                                                                                                                                           gTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTGGGAACAGGGCGTCCAGGCGCTGCGCCAGGCCATCGCCCCGCGTCAGGAAGGTACTGCGGTCGCGCTCCCGGCCCGGCCggtgggtg   >  6:187368/1‑149 (MQ=255)                                                                                                                                            atCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAGTGCGTCCAGGCGCTGCGCCAGGCCATCGACCAGCGTAAGGAAGGTACTGCGGTCGCCAAACAGGCCCGGCAGCTGGGTgc  <  1:87112/148‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                CAGCACCTTGGCGCTGGCCGAGTCCCCCGCCGAGGCTGCCAAAGCCCAGCACTTGCTGGACTACATTGGTGCCGACTACCCGCCGACCGTGCAGGACGGCAAGGTGATCGACGAGGGCGAATACCGCGAGCAACAGGAGTTCAGTGCGGTATTGGCTGACCTGGTCAAAGGCCTGCCCGCAAATACTGAACAAGCGGCTTTGGAACAGGGCGTCCAGGCGCTGCGCCAGGCCATCGACCAGCGTCAGGAAGGTACTGCGGTCGCCAAACAGGCCCGGCAGCTGGGTGC  >  NC_002947/231970‑232257

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.