New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 673990	46 (0.910)	3 (0.060)	3/244	NT	6.6%	coding (119/471 nt)	PP_0575	membrane protein
	?	NC_002947	= 674026	41 (0.860)					coding (83/471 nt)	PP_0575	membrane protein

GGCGCCGAAGCGGCCGAGCATGTAGCCTGGCAGGGTCAGCAGCATGACGATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAGGCAAGCCACAGCAGGAGAACAATGCTTTGCATTGGCAGGTCGCCTTTCCCAAATGTTGAACACTTCTACCCGGTCAGTCAGGTTTCCTTAAAAGAA  >  NC_002947/673881‑674172                                                                                                                                                  |                                                                                                                                                   ggCGCCGAAGCGGCCGAGCATGTAGCCTGGCAGGGTCAGCAGCATGACGATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGtc                                                                                                                                                  >  3:273773‑M2/1‑146 (MQ=255)        aaGCGGCCGAGCATGTAGCCTGGCAGGGTCAGCAGCATGACGATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGtt                                                                                                                                          >  1:181691/1‑149 (MQ=255)         aGCGGCCGAGCATGTAGCCTGGCAGGGTCAGCAGCATGACGATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTg                                                                                                                                         <  2:181691/149‑1 (MQ=255)           cGGCCGAGCATGTAGCCTGGCAGGGTCAGCAGCATGACGATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGa                                                                                                                                       <  1:176679/149‑1 (MQ=255)           cGGCCGAGCATGTAGCCTGGCAGGGTCAGCAGCATGACGATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGa                                                                                                                                       <  7:56859/149‑1 (MQ=255)            ggCCGAGCATGTAGCCTGGCAGGGTCAGCAGCATGACGATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGa                                                                                                                                       >  5:231839/1‑148 (MQ=255)            ggCCGAGCATGTAGCCGGGCAGGGTCAGCAGCATGACGATGGCCAGCGCCCAACCGGCCTCGCTGGCGTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGat                                                                                                                                      <  3:66437/149‑1 (MQ=255)                   cATGTAGCCTGGCATGGTCAGCAGCATGACGATTGCCAGCGCACAACCGGCCTCGCTGGCTTCGTCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCATGGCGCAGCCAGCCGCCCCCAGGGTCATCACGTTGGATATCTGGc                                                                                                                               <  3:243890/149‑1 (MQ=255)                     tGTAGCCTGGCAGGGTCAGCAGCATGACGATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGt                                                                                                                             >  6:123148/1‑149 (MQ=255)                              gCAGGGTCAGCAGCATGACGATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGcaca                                                                                                                    >  6:323371/1‑149 (MQ=255)                                    tCAGCAGCATGACGATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGt                                                                                                              <  5:252832/149‑1 (MQ=255)                                     cagcagCATGACGATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGtt                                                                                                             >  4:52850/1‑149 (MQ=255)                                      agcagcATGACGATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTc                                                                                                            >  8:36320/1‑149 (MQ=255)                                         agcaTGACGATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGa                                                                                                         <  4:251064/149‑1 (MQ=255)                                         agcaTGACGATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGa                                                                                                         <  4:157086/149‑1 (MQ=255)                                          gcaTGACGATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAg                                                                                                        <  7:36320/149‑1 (MQ=255)                                          gcaTGACGATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAg                                                                                                        <  5:323371/149‑1 (MQ=255)                                              gACGATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTc                                                                                                            >  1:103046/1‑141 (MQ=255)                                              gACGATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTc                                                                                                            <  2:103046/141‑1 (MQ=255)                                                cGATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAg                                                                                                  >  7:43704/1‑149 (MQ=255)                                                cGATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAg                                                                                                  <  8:43704/149‑1 (MQ=255)                                                cGATGGCCAGCGCCCAACCGGCCTCGCTGGATTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAg                                                                                                  >  3:116932/1‑149 (MQ=255)                                                 gATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTg                                                                                                                                         <  7:61736/109‑1 (MQ=255)                                                 gATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTg                                                                                                                                         >  8:61736/1‑109 (MQ=255)                                                 gATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAgg                                                                                                 >  7:61081/1‑149 (MQ=255)                                                                         gCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAGGCAAGCCACAGCAGGAGAACAATGc                                                                         >  5:74859/1‑149 (MQ=255)                                                                         gCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAGGCAAGCCACAGCAGGAGAACAATGc                                                                         <  6:231839/149‑1 (MQ=255)                                                                          cTGTCTTCGGCGCCTATCCAGATCTGACCAGTGCTGAACAGCAAGGCAAGGGCGCAGCCAGCCGCCCCCAGGTACAGCACGTTGGATATCTGGCGTTGACGCACATCCAGTTCGGAGCACAAGGCAAGCCACAGCAGCAGAACAATGCt                                                                        >  6:43212/1‑149 (MQ=255)                                                                           tGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAGGCAAGCCACAGCAGGAGAACAATGCtt                                                                       >  3:188300/1‑149 (MQ=255)                                                                              cTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAGGCAAGCCACAGCAGGAGAACAATGCTTTg                                                                     >  8:148914/1‑148 (MQ=255)                                                                                     gcCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAGGCAAGCCACAGCAGGAGAACAATGCTTTGCATTgg                                                               >  4:314833/1‑147 (MQ=255)                                                                                         aTCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCg                                                                                                           <  1:113321/99‑1 (MQ=255)                                                                                         aTCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCg                                                                                                           >  2:113321/1‑99 (MQ=255)                                                                                           ccAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAGGCAAGCCACAGCAGGAGAACAATGCTTTGCATTGGCAGGTCGc                                                       >  1:243465/1‑149 (MQ=255)                                                                                                 gtgACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAGGCAAGCCACAGCAGGAGAACAATGCTTTGCATTGGCAGGTCGCCTTTcc                                                 >  7:120881/1‑149 (MQ=255)                                                                                                  tgACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAGGCAAGCCACAGCAGGAGAACAATGCTTTGCATTGGCAGGTCGCCTTTcc                                                 <  6:152905/148‑1 (MQ=255)                                                                                                    aCCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGtcagcactggtcacagctggataggcgccgaagccagcgaggccggttgggcgctggccatcgtcatgctgctgaccctgccaggctacatgctcggccgct                                              <  5:138746‑M2/149‑103 (MQ=255)                                                                                                     ccAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGtcagcactggtcacagctggataggcgccgaagccagcgaggccggttgggcgctggccatcgtcatgctgctgaccctgccaggctacatgctcggccgctt                                             <  1:297250‑M2/149‑104 (MQ=255)                                                                                                     ccAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGAAGCACATCCTGTTCGGAGCACAAGGCAAGCCACAGCAGGAGAACAATGCTTTGCATTGGCAGGTCGCCTTTCCCaaa                                             >  6:140760/1‑149 (MQ=255)                                                                                                       aGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGtcagcactggtcacagctggataggcgccgaagccagcgaggccggttgggcgctggccatcgtcatgctgcttaccctgccaggctacatgctcggccgcttcg                                           <  7:132759‑M2/149‑106 (MQ=255)                                                                                                         tGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAGGCAAGCCACAGCAGGAGAACAATGCTTTGCATTGGCAGGTCGCCTTTCCCAAATGtt                                         <  3:314833/149‑1 (MQ=255)                                                                                                           cTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAGGCAAGCCACAGCAGGAGAACAATGCTTTGCATTGGCAGGTCGCCTTTCCCAAATGTTg                                        >  7:21004/1‑148 (MQ=255)                                                                                                             gAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAGGCAAGCCACAGCAGGAGAACAATGCTTTGCATTGGCAGGTCGCCTTTCCCAAATGTTGa                                       >  2:5068/1‑147 (MQ=255)                                                                                                             gAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAGGCAAGCCACAGCAGGAGAACAATGCTTTGCATTGGCAGGTCGCCTTTCCCAAATGTTGa                                       <  1:5068/147‑1 (MQ=255)                                                                                                              aaCAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAGGCAAGCCACAGCAGGAGAACAATGCTTTGCATTGGCAGGTCGCCTTTCCCAAATGTTGaa                                      <  2:243465/147‑1 (MQ=255)                                                                                                                          aggGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAGGCAAGCCACAGCAGGAGAACAATGCTTTGCATTGGCAGGTCGCCTTTc                                                  >  3:93920/1‑123 (MQ=255)                                                                                                                          aggGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAGGCAAGCCACAGCAGGAGAACAATGCTTTGCATTGGCAGGTCGCCTTTc                                                  <  4:93920/123‑1 (MQ=255)                                                                                                                                 agccagccGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAGGCAAGCCACAGCAGGAGAACAATGCTTTGCATTGGCAGGTCGCCTTTCCCAAATGTTGAACACTTCTACCCGGtcagtcag                 <  8:120881/149‑1 (MQ=255)                                                                                                                                 agccagccGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAGGCAAGCCACAGCAGGAGAACAATGCTTTGCATTGGCAGGTCGCCTTTCCCAAATGTTGAACACTTCTACCCGGtcagtcag                 <  6:74859/149‑1 (MQ=255)                                                                                                                                                gggTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAGGCAAGCCACAGCAGGAGAACAATGCTTTGCATTGGCAGGTCGCCTTTCCCAAATGTTGAACACTTCTACCCGGTCAGTCAGGTTTCCTTAAaagaa  <  7:148914/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                   GGCGCCGAAGCGGCCGAGCATGTAGCCTGGCAGGGTCAGCAGCATGACGATGGCCAGCGCCCAACCGGCCTCGCTGGCTTCGGCGCCTATCCAGCTGTGACCAGTGCTGAACAGCCAGGCCAGGGCGCAGCCAGCCGCCCCCAGGGTCAGCACGTTGGATATCTGGCGTTGACGCACATCCTGTTCGGAGCACAAGGCAAGCCACAGCAGGAGAACAATGCTTTGCATTGGCAGGTCGCCTTTCCCAAATGTTGAACACTTCTACCCGGTCAGTCAGGTTTCCTTAAAAGAA  >  NC_002947/673881‑674172

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.