New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1494705 = | 39 (0.770) | 4 (0.080) | 4/246 | NT | 9.4% | coding (166/2277 nt) | PP_1306 | Pyocin S‑type killer domain‑containing protein |
? | NC_002947 | 1494745 = | 40 (0.830) | coding (126/2277 nt) | PP_1306 | Pyocin S‑type killer domain‑containing protein |
GTTTGTTTCATGAGCATACTTATCTGAATAGTCCTTTTCGATGATTTGAAATTCTTCTGTCAGCACCCTACGCGTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAGCGCCTCATCGAGATAATACGTATTGTCCCGTGCCATGTAGGTTCTCCTGATCACTACATGGGCTAGGTTTACG > NC_002947/1494598‑1494889 | tggcacgggacaatacgtattatctcgatgaggcgctatacatcagtgcgcaagcacctacaggtattgaactgagttttatcggtggcggtgggccgggctcaggtGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCAc > 7:304408‑M1/108‑149 (MQ=255) tttCATGAGCATACTTATCTGAATAGTCCTTTTCGATGATTTGAAATTCTTCTGTCAGCACCCTACGCGTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAg > 8:70461/1‑149 (MQ=255) aTGAGCATACTTATCTGAATAGTCCTTTTCGATGATTTGAAATTCATCTGTCAGCACCCTACGCGTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCg > 1:226187/1‑149 (MQ=255) aCTTATCTGAATAGTCCTTTTCGATGATTTGAAATTCTTCTGTCAGCACCCTACGCGTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGACGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCccaccg > 6:269719/1‑149 (MQ=255) ttATCTGAATAGTCCTTTTCGATGATTTGAAATTCTTCTGTCAGCACCCTACGCGTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCccaccgcc > 8:120540/1‑149 (MQ=255) tCTGAATAGTCCTTTTCGATGATTTGAAATTCTTCTGTCAGCACCCTACGCGTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCccaccgccac < 7:70461/148‑1 (MQ=255) gAATAGTCCTTTTCGATGATTTGAAATTCTTCTGTCAGCACCCTACGCGTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGa > 5:6634/1‑148 (MQ=255) aaTAGTCCTTTTCGATGATTTGAAATTCTTCTGTCAGCACCCTACGCGTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGa < 1:73850/147‑1 (MQ=255) tCCTTTTCGATGATTTGAAATTCTTCTGTCAGCACCCTACGCGTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAAc > 5:275116/1‑148 (MQ=255) ccTTTTCGATGATTTGAAATTCTTCTGTCAGCACCCTACGCGTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACt > 8:29628/1‑148 (MQ=255) atgatTTGAAATTCTTCTGTCAGCACCCTACGCGTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCaa > 3:247651/1‑148 (MQ=255) tgatTTGAAATTCTTCTGTCAGCACCCTACGCGTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTTGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATa < 3:81669/149‑1 (MQ=255) tcttctGTCAGCACCCTACGCGTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGc > 5:311886/1‑149 (MQ=255) gTCAGCACCCTACGCGTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTc > 8:100124/1‑123 (MQ=255) gTCAGCACCCTACGCGTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTc < 7:100124/123‑1 (MQ=255) gTCAGCACCCTACGCGTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTgcg > 4:308511/1‑148 (MQ=255) gTCAGCACCCTACGCGTGGAAATAACCCGAGCAAAATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTAAGTTCAATACCTGTAGGTGCTTgcg > 7:148098/1‑148 (MQ=255) tCAGCAGCCTACGGGTGGAAATAACCCGAGCAAAATCATTTTTGTTTGGGCTGGTGCCTAGTTGATAACCATCGCTTAGCCCCCAGCCACCTGAGACCGGCCCACCGCCACCTATAAAACTCAGTTCAATACCTGTAGGTGGTTgctc < 8:148098/148‑3 (MQ=255) tCAGCACCCTACGCGTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCtt > 3:256125/1‑144 (MQ=255) tCAGCACCCTACGCGTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCtt < 4:256125/144‑1 (MQ=255) cACCCTACGCGTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGa > 3:99141/1‑149 (MQ=255) aCCCTACGCGTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGAt < 6:6634/149‑1 (MQ=255) cgcgTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGtata < 8:91085/148‑1 (MQ=255) gcgTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAgc > 8:171724/1‑149 (MQ=255) gTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCCCCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAgcgc > 4:285657/1‑149 (MQ=255) gTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGt < 8:201603/142‑1 (MQ=255) gTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGt > 7:201603/1‑142 (MQ=255) gAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAGCGCCt < 7:120540/148‑1 (MQ=255) aTAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAGCGCCTCATc < 2:226187/149‑1 (MQ=255) aTAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAGCGCCTCATc > 4:95966/1‑149 (MQ=255) tAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAGCGCCTCATCg < 4:247651/149‑1 (MQ=255) cccGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAGCGCCTCATCgag > 7:230298/1‑148 (MQ=255) ccGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGAt > 3:114718/1‑129 (MQ=255) ccGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGAt < 4:114718/129‑1 (MQ=255) atatCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAGCGCCTCATCGAGATAATACGt < 6:311886/149‑1 (MQ=255) ttggGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAGCGCCTCATCGAGATAATACGTATTGTCCCGTGcc < 7:29628/149‑1 (MQ=255) gtggctgggggctaagcgatggttatccacgcggcaccagccACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAGCGCCTCATCGAGATAATACGTATTGTCCCGTGCCa > 7:304408‑M2/43‑149 (MQ=255) gctgggggctaagcgatggttatccacgcggcaccagccACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGAt < 4:69848‑M2/66‑1 (MQ=255) gctgggggctaagcgatggttatccacgcggcaccagccACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGAt > 3:69848‑M2/40‑105 (MQ=255) cgTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAGCGCCTCATCGAGATAATACGTATTGTCCCGTGCCATGTAGGTTCTCCt < 3:254918/149‑1 (MQ=255) cgatggttatccacgcggcaccagccACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAGCGCCTCATCGAGATAATACGTATTGTCCCGTGCCATGTAGGTTCTCCTGAt < 8:304408‑M2/123‑1 (MQ=255) gATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAGCGCCTCATCGAGATAATACGTATTGTCCCGTGCCATGTAGGTtctc > 6:20805/1‑143 (MQ=255) gATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAGCGCCTCATCGAGATAATACGTATTGTCCCGTGCCATGTAGGTtctc < 5:20805/143‑1 (MQ=255) gATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAGCGCCTCATCGAGATAATACGTATTGTCCCGTGCCATGTAGGTTCTCCTGAt < 7:171724/148‑1 (MQ=255) tAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAGCGCTTCATCGAGATAATACGTATTGTCCCGTGCCATGTAGGTTCTCCTGATCACTACATGGGc > 7:72876/1‑147 (MQ=255) cccccAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAGCGCCTCATCGAGATAATACGTATTGTCCCGTGCCATGTAGGTTCTCCTGATCACTACATGGGCTAGGt > 8:98203/1‑149 (MQ=255) cccAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAGCGCCTCATCGAGATAATACGTATTGTCCCGTGCCATGTAGGTTCTCCTGATCACTACATGGGCTAGGttt < 3:308511/149‑1 (MQ=255) gccACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAGCGCCTCATCGAGATAATACGTATTGTCCCGTGCCATGTAGGTTCTCCTGATCACTACATGGGCTAGGTTTACg > 6:46150‑M2/4‑148 (MQ=255) ccACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAGCGCCTCATCGAGataa < 2:185210‑M2/88‑1 (MQ=255) ccACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAGCGCCTCATCGAGataa > 1:185210‑M2/3‑90 (MQ=255) | GTTTGTTTCATGAGCATACTTATCTGAATAGTCCTTTTCGATGATTTGAAATTCTTCTGTCAGCACCCTACGCGTGGAAATAACCCGAGCAATATCATTTTTGGTTGGGCTGGTGCCGCGTGGATAACCATCGCTTAGCCCCCAGCCACCTGAGCCCGGCCCACCGCCACCGATAAAACTCAGTTCAATACCTGTAGGTGCTTGCGCACTGATGTATAGCGCCTCATCGAGATAATACGTATTGTCCCGTGCCATGTAGGTTCTCCTGATCACTACATGGGCTAGGTTTACG > NC_002947/1494598‑1494889 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |