New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1898386 =	56 (1.110)	5 (0.100)	5/250	NT	8.4%	intergenic (‑175/‑43)	rdgC/PP_t15	recombination‑associated protein RdgC/tRNA‑Val
	?	NC_002947	1898420 =	NA (NA)					intergenic (‑209/‑9)	rdgC/PP_t15	recombination‑associated protein RdgC/tRNA‑Val

CAGCCCTGTCAGAGGGCCAGCAGTGGCTTATGCATGAAAGAATCGCCCGGTAACGCTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGATGTATAGCGCAGCGGTAGTTCAGTCGGTTAGAA  >  NC_002947/1898273‑1898542                                                                                                                                                    |                                                                                                                           ctgaactaccgctgcgctatacatcgagtggtgggtgatgacgggatcgaaccgccgaccctctgcttgtaaggcagatgctctcccggctgagctaatcacccatgtctctcGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCga                                                                                                                           >  8:245544‑M1/114‑149 (MQ=255)     ccTGTCAGAGGGCCATCAGTGGCTTATGCATGAAAGAATCGCCCGGTAACGCTAGGGCTTTGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTATAATGCGCGCCACACCgagaga                                                                                                                       <  2:210732/149‑1 (MQ=255)           agagGGCCAGCAGTGGCTTATGCATGAAAGAATCGCCCGGTAACGCTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATggg                                                                                                                 >  4:135692/1‑149 (MQ=255)           agagGGCCAGCAGTGGCTTATGCATGAAAGAATCGCCCGGTAACGCTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATggg                                                                                                                 <  6:164924/149‑1 (MQ=255)           agagGGCCAGCAGTGGCTTATGCATGAAAGAATCGCCCGGTAACGCTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATgg                                                                                                                  <  3:278769/148‑1 (MQ=255)                  cagcagTGGCTTATGCATGAAAGAATCGCCCGGTAACGCTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTGAAAAAAGTTTAAAATGTCCTTGCAAGGGTGCGGGGCGAGCCTAAGAATGCGCCCAACACCGAGAGCCATGGGTGATTAg                                                                                                          >  1:285484/1‑149 (MQ=255)                    gcagTGGCTTATGCATGAAAGAATCGCCCGGTAACGCTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCt                                                                                                        <  7:193229/149‑1 (MQ=255)                      agTGGCTTATGCATGAAAGAATCGCCCGGTAACGCTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCa                                                                                                      <  4:158583/149‑1 (MQ=255)                        tGGCTTATGCATGAAAGAATCGCCCGGTAACGCTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATggg                                                                                                                 >  3:92572/1‑136 (MQ=255)                        tGGCTTATGCATGAAAGAATCGCCCGGTAACGCTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATggg                                                                                                                 <  4:92572/136‑1 (MQ=255)                          gCTTATGCATGAAAGAATCGCCCGGTAACGCTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCg                                                                                                  >  5:162758/1‑149 (MQ=255)                          gCTTATGCATGAAAGAATCGCCCGGTAACGCTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCg                                                                                                  >  3:189461/1‑149 (MQ=255)                             tATGCATGAAAGAATCGCCCGGTAACGCTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATgg                                                                                                                  >  7:199164/1‑130 (MQ=255)                             tATGCATGAAAGAATCGCCCGGTAACGCTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATgg                                                                                                                  <  8:199164/130‑1 (MQ=255)                                 cATGAAAGAATCGCCCGGTAACGCTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGc                                                                                           <  6:73309/149‑1 (MQ=255)                                  aTGAAAGAATCGCCCGGTAACGCTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGc                                                                                           <  2:291407/148‑1 (MQ=255)                                  aTGAAAGAATCGCCCGGTAACGCTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGc                                                                                           >  1:291407/1‑148 (MQ=255)                                    gAAAGAATCGCCCGGTAACGCTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCgagag                                                                                                                        <  1:167791/117‑1 (MQ=255)                                    gAAAGAATCGCCCGGTAACGCTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCgagag                                                                                                                        >  2:167791/1‑117 (MQ=255)                                           gggatcgaaccgccgaccctctgcttgtaaggcagatgctctcccggctgagctaatcacccatgtctctcGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCgagag                                                                                                                        >  1:85930‑M1/72‑110 (MQ=255)                                           gggatcgaaccgccgaccctctgcttgtaaggcagatgctctcccggctgagctaatcacccatgtctctcGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCgagag                                                                                                                        <  2:85930‑M1/39‑1 (MQ=255)                                              cccGGTAACGCTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTTCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGga                                                                                               <  3:19283/132‑1 (MQ=255)                                              cccGGTAACGCTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGga                                                                                               >  4:19283/1‑132 (MQ=255)                                                       gCTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAggg                                                                      >  5:247746/1‑148 (MQ=255)                                                        cTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTc                                                                    >  6:59960/1‑149 (MQ=255)                                                                 tGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGtt                                                             <  3:135692/147‑1 (MQ=255)                                                                    aaGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATc                                                        >  8:256655/1‑149 (MQ=255)                                                                       gTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCg                                                     <  5:993/149‑1 (MQ=255)                                                                            aGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGtca                                                  <  4:189461/147‑1 (MQ=255)                                                                               ttttttttGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATcacc                                             >  3:89165/1‑149 (MQ=255)                                                                               ttttttttGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATcacc                                             >  7:247329/1‑149 (MQ=255)                                                                                 ttttttGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATcaccca                                           >  7:294744/1‑149 (MQ=255)                                                                                      tGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATCACCcaccac                                       <  4:89165/148‑1 (MQ=255)                                                                                        cAAAAAGTTTAAAAAGTGCTTGCCTGGGTGCGGGGCGCTGCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTc                                     <  4:88388/148‑1 (MQ=255)                                                                                         aaaaaGTTTAAAAAGTGCTTGCCAGGGTGCGTGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGa                                   <  6:247746/149‑1 (MQ=255)                                                                                         aaaaaGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGa                                   >  7:193040/1‑149 (MQ=255)                                                                                         aaaaaGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGa                                   <  5:59960/149‑1 (MQ=255)                                                                                         aaaaaGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGa                                   >  5:222502/1‑149 (MQ=255)                                                                                          aaaaGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTGAGTAGAATGCGCGCAACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGa                                   <  4:213315/148‑1 (MQ=255)                                                                                          aaaaGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGAt                                  <  7:256655/149‑1 (MQ=255)                                                                                          aaaaGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGAt                                  <  2:204108/149‑1 (MQ=255)                                                                                                taatcacccatgtctctcGGTGTGGCGCGCATTCTACGGAGCGCCCCGCACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGATGTATAg                            <  1:187698‑M1/131‑1 (MQ=255)                                                                                                 tAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGATGTATAgc                           >  4:291240/1‑149 (MQ=255)                                                                                                    aaaGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAgg                                                                       >  7:160384/1‑102 (MQ=255)                                                                                                    aaaGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAgg                                                                       <  8:160384/102‑1 (MQ=255)                                                                                                          cTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGATGTATAGCGCAGCGGTa                  <  7:244414/149‑1 (MQ=255)                                                                                                           ttGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGAGCCCGTCATCACCCACCACTCGATGTATAGCGCAGCGGTAg                 >  2:212154/1‑149 (MQ=255)                                                                                                             gCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGATGTATAGCGCAGCGGTAGtt               >  8:25466/1‑149 (MQ=255)                                                                                                               cAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGATGTATAGCGCAGCGGTAGTTCa             <  6:222502/149‑1 (MQ=255)                                                                                                                  GGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGATGTATAGCGCAGCGGTAGTTCAGTc          <  8:28289‑M1/149‑1 (MQ=255)                                                                                                                       ggggCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGATGTATAGCGCAGCGGTAGTTCAGTCGGTTa     <  6:129977/149‑1 (MQ=35)                                                                                                                       ggggCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGATGTATAGCGCAGCGGTAGTTCAGTCGGTTa     <  3:291240/149‑1 (MQ=35)                                                                                                                          gcgcTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGATGTATAGCGCAGCGGTAGTTCAGTCGGTTAGaa  <  8:247329/149‑1 (MQ=33)                                                                                                                                                    |                                                                                                                           CAGCCCTGTCAGAGGGCCAGCAGTGGCTTATGCATGAAAGAATCGCCCGGTAACGCTAGGTCTTTGAAAGGTCTGAGGTTTTTTTTGCAAAAAGTTTAAAAAGTGCTTGCCAGGGTGCGGGGCGCTCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGATGTATAGCGCAGCGGTAGTTCAGTCGGTTAGAA  >  NC_002947/1898273‑1898542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.