New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2126088	65 (1.290)	4 (0.080)	4/248	NT	6.9%	coding (1459/3873 nt)	PP_1887	hypothetical protein
	?	NC_002947	= 2126174	45 (0.930)					coding (1545/3873 nt)	PP_1887	hypothetical protein

CGTGCAACCCGCAGCGACAGGACACGGGGCGGCCGCCACCTTGACCCAGGCGTTCCAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCAGCTATGGGCGAGTCAGGCAGCAAACTGTCAGTTACCCCGGTGTCGATGGAGGCAGCCCGTTCGACACCCTGACCCATTATGG  >  NC_002947/2126027‑2126314                                                                                                                                                    |                                                                                                                                             cGTGCAACCCGCAGCGACAGGACACGGGGCGGCCGCCACCTTGACCCAGGCGTTCCAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTg                                                                                                                                             <  8:24551‑M2/149‑2 (MQ=255) cGTGCAACCCGCAGCGACAGGACACGGGGCGGCCGCCACCTTGACCCAGGCGTTCCAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTg                                                                                                                                             <  8:19760‑M2/149‑2 (MQ=255)        cccGCAGCGACAGGACACGGGGCGGCCGCCACCTTGACCCAGGCGTTCCAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGtt                                                                                                                                      <  7:247744/149‑1 (MQ=255)         ccGCAGCGACAGGACACGGGGCGGCCGCCACCTTGACCCAGGCGTTCCAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTc                                                                                                                                     <  7:220912/149‑1 (MQ=255)                 aCAGGACACGGGGCGGCCGCCACCTTGACCCAGGCGTTCCAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCt                                                                                                                                   <  1:34042/143‑1 (MQ=255)                 aCAGGACACGGGGCGGCCGCCACCTTGACCCAGGCGTTCCAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCt                                                                                                                                   >  2:34042/1‑143 (MQ=255)                    ggACACGGGGCGGCCGCCACCTTGACCCAGGCGTTCCAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAAt                                                                                                                          <  8:187479/149‑1 (MQ=255)                     gACACGGGGCGGCCGCCACCTTGACCCAGGCGTTCCAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAAt                                                                                                                          >  2:229929/1‑148 (MQ=255)                          ggggCGGCCGCCACCTTGACCCAGGCGTTCCAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGc                                                                                                                      >  2:172282/1‑147 (MQ=255)                                 ccgccACCTTGACCCAGGCGTTCCAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCa                                                                                                                     >  3:155441/1‑141 (MQ=255)                                 ccgccACCTTGACCCAGGCGTTCCAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCa                                                                                                                     <  4:155441/141‑1 (MQ=255)                                    ccACCTTGACCCAGGCGTTCCAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCag                                                                                                          >  3:166907/1‑149 (MQ=255)                                      aCCTTGACCCAGGCGTTCCAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCagga                                                                                                        <  4:163780/149‑1 (MQ=255)                                       ccTTGACCCAGGCGTTCCAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCaggag                                                                                                       <  4:166907/149‑1 (MQ=255)                                        cTTGACCCAGGCGTTCCAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTAc                                                                                                             >  3:31833/1‑142 (MQ=255)                                        cTTGACCCAGGCGTTCCAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTAc                                                                                                             <  4:31833/142‑1 (MQ=255)                                             cccAGGCGTTCCAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCagga                                                                                                        <  4:102392/142‑1 (MQ=255)                                             cccAGGCGTTCCAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCagga                                                                                                        >  3:102392/1‑142 (MQ=255)                                                 ggCGTTCCAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGcc                                                                                              >  7:89298/1‑148 (MQ=255)                                                   cGTTCCAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACCTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAg                                                                                           <  1:229929/149‑1 (MQ=255)                                                       ccAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTggtactggaacgcctgggtcaaggtggcggccgccccgtgtcctgtcgctgcggg                                                                                       <  6:143848‑M2/149‑56 (MQ=255)                                                       ccAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATc                                                                                                  >  6:31835/1‑138 (MQ=255)                                                       ccAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATc                                                                                                  <  5:31835/138‑1 (MQ=255)                                                         aGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTggtactggaacgcctgggtcaaggtggcggccgccccgtgtcctgtcgctgcgggtt                                                                                     <  2:46694‑M2/149‑58 (MQ=255)                                                          gTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCa                                                                                    <  1:207557/149‑1 (MQ=255)                                                             ccGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTggtactggaacgcctgggtcaaggtggcggccgccccgtgtcctgtcgctgcgggttgca                                                                                  >  5:143848‑M2/1‑88 (MQ=255)                                                              cGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCAGCTa                                                                                >  5:208499/1‑149 (MQ=255)                                                                   gcTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCAGCTATGGGc                                                                           <  6:208499/149‑1 (MQ=255)                                                                     tGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATc                                                                                                  <  5:236673/124‑1 (MQ=255)                                                                     tGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATc                                                                                                  >  6:236673/1‑124 (MQ=255)                                                                          ccGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCAGCTATGGGCGAGTCAg                                                                    <  3:154267/149‑1 (MQ=255)                                                                             ttGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCAGCTATGGGCGAGTCAGgca                                                                 <  1:172282/149‑1 (MQ=255)                                                                                 gTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCAGCTATGGGCGAGTCAGgcagca                                                              >  8:240129/1‑148 (MQ=255)                                                                                    gCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCAGCTATGGGCGAGTCAGGCAGCAAAc                                                           <  7:240129/148‑1 (MQ=255)                                                                                             agcagcCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCAGCTTTGGGCGAGTCAGGCAGCAAACTGTCAGTTAc                                                 >  7:47906/1‑149 (MQ=255)                                                                                                  cccTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCAGCTATGGGCGAGTCAGGCAGCAAACTGTCAGTTACCCCgg                                            >  8:22544/1‑149 (MQ=255)                                                                                                   ccTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCAGCTATGGGCGAGTCAGGCAGCAAACTGTCAGTTACCCCGgt                                           >  8:39629/1‑149 (MQ=255)                                                                                                         gcTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTTGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCAGCTATGGGCGAGTCAGGCAGCAAACTGTCAGTTACCCCGGTGTCGAt                                     <  8:89298/149‑1 (MQ=255)                                                                                                          cTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCAGCTATGGGCGAGTCAGGCAGCAAACTGTCAGTTACCCCGGTGTCGATg                                    <  2:312435/149‑1 (MQ=255)                                                                                                                        agaCCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCAGCTATGGGCGAGTCAGGCAGCAAACTGTCAGTTACCCCGGTGTCGATGGAGGCAGCCCGTTc                      <  7:39629/149‑1 (MQ=255)                                                                                                                            ccTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCagga                                                                                                        >  7:54627/1‑63 (MQ=255)                                                                                                                            ccTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCagga                                                                                                        <  8:54627/63‑1 (MQ=255)                                                                                                                            ccTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGCGCGCTTCAGCTATGGGCTAGTCAGGCAGCAAACTGTCAGTTACCCAGGTGTCGCTGGAGGCAGCCCGGTCGaca                  >  5:268228/1‑149 (MQ=255)                                                                                                                            ccTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCAGCTATGGGCGAGTCAGGCAGCAAACTGTCAGTTACCCCGGTGTCGATGGAg                                 >  2:136259/1‑134 (MQ=255)                                                                                                                            ccTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCAGCTATGGGCGAGTCAGGCAGCAAACTGTCAGTTACCCCGGTGTCGATGGAg                                 <  1:136259/134‑1 (MQ=255)                                                                                                                            ccTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCAGCTATGGGCGAGTCAGGCAGCAAACTGTCAGTTACCCCGGTGTCGATGGAGGCAGCCCGTTCGaca                  >  5:191659/1‑149 (MQ=255)                                                                                                                            ccTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCAGCTATGGGCGAGTCAGGCAGCAAACTGTCAGTTACCCCGGTGTCGATGGAGGCAGCCCGTTCGaca                  >  3:297000/1‑149 (MQ=255)                                                                                                                            ccTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCAGCTATGGGCGAGTCAGGCAGCAAACTGTCAGTTACCCCGGTGTCGATGGAGGCAGCCCGTTCGaca                  >  2:173409/1‑149 (MQ=255)                                                                                                                              tGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCAGCTATGGGCGAGTCAGGCAGCAAACTGTCAGTTACCCCGGTGTCGATGGAGGCAGCCCGTTCGACAcc                >  6:32643/1‑149 (MQ=255)                                                                                                                                aGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCAGCTATGGGCGAGTCAGGCAGCAAACTGTCAGTTACCCCGGTGTCGATGGAGGCAGCCCGTTCGACACCCt              <  7:22544/149‑1 (MQ=255)                                                                                                                                          gTAGCGCGCCTggtactggaacgcctgggtcaaggtggcggccgccccgtgtcctgtcgctgcgggttgcacggtccgggtcttcaggttgcgcacgaaaccgtgctcatcaccctcctcctcggccgagtaccagacattggtttcca    >  1:46694‑M2/1‑11 (MQ=255)                                                                                                                                          gTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCAGCTATGGGCGAGTCAGGCAGCAAACTGTCAGTTACCCCGGTGTCGATGGAGGCAGCCCGTTCGACACCCTGACCCATTAt    <  4:297000/149‑1 (MQ=255)                                                                                                                                             tcgctcCTTGGACGTTACTGGAAAACATCAGCAAGCTTTACAAGGATGCATCGTCCTAGCGCTTCAGCTATGTGCGAGTCAGGCAGCAAACTGTCAGTTACCCCGGTGTCGATGGAGGCAGCCCGTTCGACACCCTGACCCATTATgg  <  6:268228/147‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                             CGTGCAACCCGCAGCGACAGGACACGGGGCGGCCGCCACCTTGACCCAGGCGTTCCAGTACCGGGCGCTGACCCCGTTGGGTAGCTACCTGAAGCAGCCCTGGCGCTTGCTGGAAAGCGAGACCCTGAGCGAATCAGGTAGCGCGCCTGGTACGTTCCTGGAAAAAATCAGCAAGCTTTACCAGGAGGAATCGGCCGAGCGCTTCAGCTATGGGCGAGTCAGGCAGCAAACTGTCAGTTACCCCGGTGTCGATGGAGGCAGCCCGTTCGACACCCTGACCCATTATGG  >  NC_002947/2126027‑2126314

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.