New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3649513	46 (0.910)	3 (0.060)	3/248	NT	6.5%	intergenic (+990/+701)	PP_3214/PP_3216	hypothetical protein/cysteine dioxygenase
	?	NC_002947	= 3649574	42 (0.870)					intergenic (+1051/+640)	PP_3214/PP_3216	hypothetical protein/cysteine dioxygenase

CCTCGGTCGTACGCGGTCTGCTACCGCCCGGGCCTGGCCGGCGGCGTTGGCGCGGGTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCGGCACAGTTGACGATCACCTGGGTCGCCGGGTCAGGCGCCAGTTCGGCCACGCGCAGCACCAGTTCGGCGCCGGGCACGC  >  NC_002947/3649429‑3649721                                                                                                                                                   |                                                                                                                                                    ccTCGGTCGTACGCGGTCTGCTACCGCCCGGGCCTGGCCGGCGGCGTTGGCGCGGGTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGcc                                                                                                                                                   >  2:196637‑M2/1‑146 (MQ=255)    cGGTCGTACGCGGTCTGCTACCGCCCGGGCCTGGCCGGCGGCGTTGGCGCGGGTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCa                                                                                                                                               >  8:141675/1‑149 (MQ=255)      gTCGTACGCGGTCTGCTACCGCCCGGGCCTGGCCGGCGGCGTTGGCGCGGGTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCAcc                                                                                                                                             <  1:157463/149‑1 (MQ=255)            cgcgGTCTGCTACCGCCCGGGCCTGGCCGGCGGCGTTGGCGCGGGTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGAtt                                                                                                                                        <  2:245979/148‑1 (MQ=255)             gcgGTCTGCTACCGCCCGGGCCTGGCCGGCGGCGTTGGCGCGGGTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTgg                                                                                                                                      >  2:244547/1‑149 (MQ=255)                   tGCTACCGCCCGGGCCTGGCCGGCGGCGTTGGCGCGGGTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGc                                                                                                                                >  2:245339/1‑149 (MQ=255)                   tGCTACCGCCCGGGCCTGGCCGGCGGCGTTGGCGCGGGTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGc                                                                                                                                >  1:25951/1‑149 (MQ=255)                     cTACCGCCCGGGCCTGGCCGGCGGCGTTGGCGCGGGTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATg                                                                                                                                 <  8:135581/146‑1 (MQ=255)                     cTACCGCCCGGGCCTGGCCGGCGGCGTTGGCGCGGGTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCg                                                                                                                              <  2:97547/149‑1 (MQ=255)                     cTACCGCCCGGGCCTGGCCGGCGGCGTTGGCGCGGGTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCg                                                                                                                              <  8:218975/149‑1 (MQ=255)                         cGCCCGGGCCTGGCCGGCGGCGTTGGCGCGGGTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCAt                                                                                                                          >  1:231765/1‑149 (MQ=255)                           cccGGGCCTGGCCGGCGGCGTTGGCGCGGGTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTg                                                                                                                        <  3:184839/149‑1 (MQ=255)                             cGGGCCTGGCCGGCGGCGTTGGCGCGGGTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGAt                                                                                                                      <  5:40122/149‑1 (MQ=255)                                     gCCGGCGGCGTTGGCGCGGGTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGa                                                                                                                <  7:141675/147‑1 (MQ=255)                                       cggcggCGTTGGCGCGGGTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTgg                                                                                                            <  1:245339/149‑1 (MQ=255)                                       cggcggCGTTGGCGCGGGTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTgg                                                                                                            <  4:170604/149‑1 (MQ=255)                                       cggcggCGTTGGCGCGGGTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTgg                                                                                                            >  1:83628/1‑149 (MQ=255)                                           ggcgTTGGCGCGGGTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGc                                                                                                        <  2:20586/149‑1 (MQ=255)                                                  gcgcGGGTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCgatgat                                                                                                 >  5:69602/1‑149 (MQ=255)                                                    gcgGGTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGc                                                                                               <  8:65075/149‑1 (MQ=255)                                                        gTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACg                                                                                           >  2:18301/1‑149 (MQ=255)                                                           aCCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACggg                                                                                         <  5:249594/148‑1 (MQ=255)                                                           aCCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGt                                                                                        <  1:244547/149‑1 (MQ=255)                                                                     ccTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCGGca                                                                              <  2:83628/149‑1 (MQ=255)                                                                      cTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGCTTGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCGGca                                                                              >  1:219765/1‑149 (MQ=255)                                                                      cTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGt                                                                                        >  6:234230/1‑138 (MQ=255)                                                                      cTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGt                                                                                        <  5:234230/138‑1 (MQ=255)                                                                         ggaaaaGCGGGGGTCCTGACTATTAGCCAGTTTC‑TTCCCCGCCATGGTCCTGCCGATGGTGCCATTGCGCAGTGCCGCCACCGGATTGGGAATGCCGGCATTGTTCAGCGACTTGGTGCAGATTATGCTACGGGTGCTCCCGGcaca                                                                            <  4:251005/144‑1 (MQ=255)                                                                         ggCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGccgccgctttgccgaggtcaccgcggttacccgcgccaacgccgccggccaggcccgggcggtagcagaccgcg                                                                           <  3:132197‑M2/148‑75 (MQ=255)                                                                           cAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCGGCACAGtt                                                                         >  8:92410/1‑148 (MQ=255)                                                                           cAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCGGCACAGtt                                                                         >  1:51523/1‑148 (MQ=255)                                                                            aaaGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCGGCACAGTTGa                                                                       <  1:18301/149‑1 (MQ=255)                                                                                  gcggTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGccgccgctttgccgaggtcaccgcggttacccgcgccaacgccgccggccaggcccgggcggtagcagaccgcgtacgaccgag                                                                 >  4:132197‑M2/1‑65 (MQ=255)                                                                                   cggTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCGGCACAGTTGACGATCAc                                                                <  6:69602/149‑1 (MQ=255)                                                                                       ccTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGccgccgctttgccgaggtcaccgcggttacccgcgccaacgccgccggccaggcccgggcggtagcagaccgcgtacgaccgaggaata                                                            <  5:2694‑M2/149‑90 (MQ=255)                                                                                                   ccAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCGGCACAGTTGACGATCACCTGGGTCGCCGGGt                                                  >  7:69920/1‑147 (MQ=255)                                                                                                    cAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCGGCACAGTTGACGATCACCTGGGTCGCCGGGTCAg                                               <  2:231765/149‑1 (MQ=255)                                                                                                     aGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCGGCACAGTTGACGATCACCTGGGTCGCCGGGTCAgg                                              >  3:288741/1‑149 (MQ=255)                                                                                                      gTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCGGCACAGTTGACGATCACCTGGGTCGCCGGGTCAGgc                                             <  2:219765/149‑1 (MQ=255)                                                                                                      gTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCGGCACAGTTGACGATCACCTGGGTCGCCGGGTCAGgc                                             >  6:46259/1‑149 (MQ=255)                                                                                                               cccGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCGGCACAGTTGACGATCACCTGGGTCGCCGGGTCAGGCGCCAGTTc                                     >  7:210362/1‑149 (MQ=255)                                                                                                                    cAGGGTCCAGCCGATGGTGCCATTGCTCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCGGCACAGTTGACGATCACCTGGGTCGCCGGGTCAGGCGCCAGTTCGGCCa                                <  8:228336/149‑1 (MQ=255)                                                                                                                     aGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCGGCACAGTTGACGATCACCTGGGTCGCCGGGTCAGGCGCCAGTTCGGCCAc                               <  2:51523/149‑1 (MQ=255)                                                                                                                       ggTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCGGCACAGTTGACGATCACCTGGGTCGCCGGGTCAGGCGCCAGTTCGGCCAcgc                             <  2:25951/149‑1 (MQ=255)                                                                                                                          ccAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCGGCACAGTTGACGATCACCTGGGTCGCCGGGTCAGGCGCCAGTTCGGCCAcgcg                            >  7:26496/1‑147 (MQ=255)                                                                                                                            aGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCTGCACAGTTGACGATCACCTGGGt                                                          <  8:33753/115‑1 (MQ=255)                                                                                                                            aGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCGGCACAGTTGACGATCACCTGGGt                                                          >  7:33753/1‑115 (MQ=255)                                                                                                                                      gCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCGGCACAGTTGACGATCACCTGGGTCGCCGGGTCAGGCGCCAGTTCGGCCACGCGCAGCACCAGTTCgg              >  1:221785/1‑149 (MQ=255)                                                                                                                                                aGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCGGCACAGTTGACGATCACCTGGGTCGCCGGGTCAGGCGCCAGTTCGGCCACGCGCAGCACCAGTTCGGCGCCGGGCAc    >  5:321008/1‑149 (MQ=255)                                                                                                                                                 gggccgccgctttgccgaggtcaccgcggttacccgcgccaacgccgccggccaggcccgggcggtagcagaccgcgtacgaccgaggaatacagcgccggtcatctgccgggcagccgcccggtgcccggcgggcaactggttcaaga   >  6:2694‑M2/1‑3 (MQ=255)                                                                                                                                                  ggCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCGGCACAGTTGACGATCACCTGGGTCGCCGGGTCAGGCGCCAGTTCGGCCACGCGCAGCACCAGTTCGGCGCCGGGCACGc  >  5:210155/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CCTCGGTCGTACGCGGTCTGCTACCGCCCGGGCCTGGCCGGCGGCGTTGGCGCGGGTAACCGCGGTGACCTCGGCAAAGCGGCGGTCCTGACCATGAGCCAGTTGC‑TGCCCCGCCAGGGTCCAGCCGATGGTGCCATTGCGCAGGGCCGCCACCGGATTGGGAATGCCGGCATTGATCAGCGACTGGGTGCCGATGATGCTACGGGTGCGCCCGGCACAGTTGACGATCACCTGGGTCGCCGGGTCAGGCGCCAGTTCGGCCACGCGCAGCACCAGTTCGGCGCCGGGCACGC  >  NC_002947/3649429‑3649721

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.