New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4388379	51 (1.010)	3 (0.060)	3/244	NT	6.4%	coding (414/1263 nt)	PP_3864	FluMu DNA circulation protein
	?	NC_002947	= 4388429	40 (0.840)					coding (364/1263 nt)	PP_3864	FluMu DNA circulation protein

CCGGCGCACCTTGTTGACCTGCTGTCGCGCCCAGTTGACCTGGGCCATGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCA  >  NC_002947/4388286‑4388575                                                                                                                                                |                                                                                                                                                   ccGGCGCACCTTGTTGACCTGCTGTCGCGCCCAGTTGACCTGGGCCATGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGcgtgc                                                                                                                                               >  3:178507‑M2/1‑144 (MQ=255)  cGGCGCACCTTGTTGACCTGCTGTCGCGCCCAGTTGACCTGGGCCATGGCCGCATCGAAACGCGCGTTGGCCGACTCCAGAAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACTCGCTGCACCGGGAAGGCCAGcgtgcc                                                                                                                                              >  5:189130‑M2/1‑143 (MQ=255)    gcgcACCTTGTTGACCTGCTGTCGCGCCCAGTTGACCTGGGCCATGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACC‑GGAAGGCCAGCGTGCCGTc                                                                                                                                           <  7:66836/149‑1 (MQ=255)        aCCTTGTTGACCTGCTGTCGCGCCCAGTTGACCTGGGCCATGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGAt                                                                                                                                        <  5:844/149‑1 (MQ=255)        aCCTTGTTGACCTGCTGTCGCGCCCAGTTGACCTGGGCCATGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGAt                                                                                                                                        <  3:98481/149‑1 (MQ=255)          cTTGTTGACCTGCTGTCGCGCCCAGTTGACCTGGGCCATGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATg                                                                                                                                       >  5:230859/1‑148 (MQ=255)            tgttgACCTGCTGTCGCGCCCAGTTGACCTGGGCCATGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGc                                                                                                                                                   >  4:33357‑M2/1‑133 (MQ=255)                 aCCTGCTGTCGCGCCCAGTTGACCTGGGCCATGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAg                                                                                                                               <  2:40161/149‑1 (MQ=255)                   ctgctgTCGCGCCCAGTTGACCTGGGCCATGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGAt                                                                                                                                        >  1:160824/1‑138 (MQ=255)                   ctgctgTCGCGCCCAGTTGACCTGGGCCATGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGAt                                                                                                                                        <  2:160824/138‑1 (MQ=255)                   ctgctgTCGCGCCCAGTTGACCTGGGCCATGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGt                                                                                                                             <  1:163040/149‑1 (MQ=255)                   ctgctgTCGCGCCCAGTTGACCTGGGCCATGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGt                                                                                                                             >  2:163040/1‑149 (MQ=255)                             gcCCAGTTGACCTGGGCCATGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCAc                                                                                                                   >  4:90843/1‑149 (MQ=255)                             gcCCAGTTGACCTGGGCCATGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCAc                                                                                                                   >  4:95149/1‑149 (MQ=255)                                     gACCTGGGCCATGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGccc                                                                                                            <  2:44698/148‑1 (MQ=255)                                      aCCTGGGCCATGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAg                                                                                                          >  8:130575/1‑149 (MQ=255)                                        cTGGGCCATGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCt                                                                                                        >  6:218379/1‑149 (MQ=255)                                          gggCCATGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGCCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTc                                                                                                       <  5:100311/148‑1 (MQ=255)                                          gggCCATGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGCCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTc                                                                                                       >  6:100311/1‑148 (MQ=255)                                             ccATGGCCGCATCGAAACGCGACTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGATGAAGCGCCACAAGCCCAGCTCGaaa                                                                                                   >  8:290149/1‑149 (MQ=255)                                              cATGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAAc                                                                                                  <  4:129696/149‑1 (MQ=255)                                              cATGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAAc                                                                                                  >  5:182681/1‑149 (MQ=255)                                               aTGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAGCg                                                                                                 >  6:278736/1‑149 (MQ=255)                                                  gCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACggg                                                                                               <  1:157608/148‑1 (MQ=255)                                                     gCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATg                                                                                           <  6:230859/149‑1 (MQ=255)                                                          gAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCa                                                                                                                                >  3:125269/1‑107 (MQ=255)                                                          gAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCa                                                                                                                                <  4:125269/107‑1 (MQ=255)                                                               gcgcCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGTAATGGGAGATTTCg                                                                                 <  6:182681/149‑1 (MQ=255)                                                                         cGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGga                                                                                        <  1:239266/132‑1 (MQ=255)                                                                         cGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGga                                                                                        >  2:239266/1‑132 (MQ=255)                                                                          gACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCTGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCccgc                                                                      >  2:280003/1‑149 (MQ=255)                                                                             tCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCt                                                                                                        >  4:143707/1‑112 (MQ=255)                                                                             tCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCt                                                                                                        <  3:143707/112‑1 (MQ=255)                                                                               cagcagGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGa                                                                 >  2:261578/1‑149 (MQ=255)                                                                               cagcagGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGa                                                                 >  1:95807/1‑149 (MQ=255)                                                                                  cagGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACgg                                                              >  7:72731/1‑149 (MQ=255)                                                                                    gggTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGcgtgccgaccctgctggagtcggccaaggcgcgtttcgatgcggccatggcccaggtcaactgggcgcgacagcaggtcaacaaggtg                                                            <  4:167223‑M2/149‑89 (MQ=255)                                                                                     gggcGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCa                                                           <  3:54857/146‑1 (MQ=255)                                                                                     ggTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTc                                                                                  >  3:303014/1‑126 (MQ=255)                                                                                     ggTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTc                                                                                  <  4:303014/126‑1 (MQ=255)                                                                                       tCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGcgtgccgaccctgctggagtcggccaaggcgcgtttcgatgcggccatggcccaggtcaactgggcgcgacagcaggtcaacaaggtgcgc                                                         <  5:257581‑M2/149‑92 (MQ=255)                                                                                           cACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGcc                                                     <  8:72731/149‑1 (MQ=255)                                                                                              gTGCGCCGCCTGTTGCCGGCGGGTGTTCACACGCGGCACCGGTAAGTCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCTCCCGa                                                  <  8:234509/149‑1 (MQ=255)                                                                                                            gCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTAc                                     >  4:71187/1‑148 (MQ=255)                                                                                                             ccGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGcgtgccgaccctgctggagtcggccaaggcgcgtttcgatgcggccatggcccaggtcaactgggcgcgacagcaggtcaacaaggtgcgccgggccgtgtccagcgcctat                                    >  6:257581‑M2/1‑36 (MQ=255)                                                                                                               ggcggGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGt                                                                                                                             <  7:207442/57‑1 (MQ=255)                                                                                                               ggcggGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGt                                                                                                                             >  8:207442/1‑57 (MQ=255)                                                                                                                 cggGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTc                               <  2:95807/149‑1 (MQ=255)                                                                                                                    gtgtTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCGcc                            <  7:130575/149‑1 (MQ=255)                                                                                                                     tgtTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCGCCa                           <  5:218379/149‑1 (MQ=255)                                                                                                                             cGCTGCACCTGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCGCCAGGCCCCgg                   <  1:280003/149‑1 (MQ=255)                                                                                                                                              cAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCa  >  1:320956/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                   CCGGCGCACCTTGTTGACCTGCTGTCGCGCCCAGTTGACCTGGGCCATGGCCGCATCGAAACGCGCCTTGGCCGACTCCAGCAGGGTCGGCACGTGCGCCGCCAGTTGCCGGCGGGTGTTCACACGCTGCACCGGGAAGGCCAGCGTGCCGTCGATGAACGCCAGGTTGAAGCGCACCATGCCCAGCTCGAAACGGGAATGGGAGATTTCGCAATCCCCCGCCGTGACGGTCAGGCGCCCGAACCACGGGTGTACAAGTTCGCCAGGCCCCGGCGTGTCCAGCGCAACCA  >  NC_002947/4388286‑4388575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.