New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4539807 | 55 (1.090) | 3 (0.060) | 3/242 | NT | 5.6% | coding (478/831 nt) | nudC | NADH pyrophosphatase |
? | NC_002947 | = 4539826 | 50 (1.060) | coding (459/831 nt) | nudC | NADH pyrophosphatase |
TGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCAGTCTTCGGCCGATTCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGCTCCCAGCGAATTTGCGTCATCGGCTGGCCGCAACTGCCGCAGAAGCGATGCTCGCGGGCCCA > NC_002947/4539683‑4539972 | tGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCAGTCTTCGGCCGATTCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCAtcgcc < 2:271188‑M2/149‑6 (MQ=255) aaTGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCAGTCTTCGGCCGATTCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCAtcgccgc < 7:31573‑M2/149‑8 (MQ=255) tcttcACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCAGTCTTCGGCCGATTCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCa > 4:233267/1‑137 (MQ=255) tcttcACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCAGTCTTCGGCCGATTCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCa < 3:233267/137‑1 (MQ=255) cttcACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCAGTCTTCGGCCGATTCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTc < 8:31573/148‑1 (MQ=255) cACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCAGTCTTCGGCCGATTCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCa > 4:268540/1‑149 (MQ=255) cACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCAGTCTTCGGCCGATTCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCGGTACACGCCGGTGACGCAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCa > 8:300658/1‑149 (MQ=255) cTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCAGTCTTCGGCCGATTCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGCAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCa > 4:291673/1‑149 (MQ=255) cTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCAGTCTTCGGCCGATTCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCa > 1:57381/1‑149 (MQ=255) cTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCAGTCTTCGGCCGATTCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCa > 3:266487/1‑149 (MQ=255) cACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCAGTCTTCGGCCGATTCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGa < 5:192628/149‑1 (MQ=255) aCCGCCACTTCTTCGCGCACTTCGCGCACCAGGCAGTCTTCGGCCGATTCACCCGGTCCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGAt > 5:196648/1‑149 (MQ=255) ccGCCACTTCTTCGCGCACTTCGCGCACCAGGCAGTCTTCGGCCGATTCACCCGGTTCGGCAAAACCGTTGCCAAGTTGGTTAACCCCCCGGTGACAAACCCCGGCGAACCCCCCACCAGGATTTAAACCCCGCGGGACAccgccacc > 1:100172/1‑142 (MQ=255) aCTTCTTCGCGCACTTCGCGCACCAGGCAGTCTTCGGCCGATTCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAg < 5:235988/137‑1 (MQ=255) aCTTCTTCGCGCACTTCGCGCACCAGGCAGTCTTCGGCCGATTCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAg > 6:235988/1‑137 (MQ=255) gcgcacttcgcgcacCAGGCAGTCTTCGGCCGATTCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGaaa < 2:120373/149‑1 (MQ=255) cAGGCAGTCTTCGGCCGATTCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAg > 4:29437/1‑114 (MQ=255) cAGGCAGTCTTCGGCCGATTCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTgc < 7:271790/149‑1 (MQ=255) cAGGCAGTCTTCGGCCGATTCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGAGCATGCGGGGTGAAATTCGCGGATAGCTgc > 3:193818/1‑149 (MQ=255) cAGTCTTCGGCCGATTCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAg < 4:266487/149‑1 (MQ=255) tCTTCGGCCGATTCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTc < 2:57381/149‑1 (MQ=255) aTTCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTgg < 8:25950/149‑1 (MQ=255) ttCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGc < 3:268540/149‑1 (MQ=255) aCCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCaa < 3:26558/148‑1 (MQ=255) cGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGcc > 5:65168/1‑149 (MQ=255) ggCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGcc < 5:288437/148‑1 (MQ=255) gCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGccc < 1:197879/148‑1 (MQ=255) gCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGccc > 2:197879/1‑148 (MQ=255) gCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCg > 7:80411/1‑149 (MQ=255) gCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCg < 8:188319/149‑1 (MQ=255) gCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCg > 7:7177/1‑149 (MQ=255) cAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCg > 7:74182/1‑148 (MQ=255) cAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGc > 2:217101/1‑149 (MQ=255) aaaaCC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGa > 2:311227/1‑109 (MQ=255) aaaaCC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGa < 1:311227/109‑1 (MQ=255) aaCC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGCTcc < 8:7177/149‑1 (MQ=255) cAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGCTCCCAGCGaa < 2:100172/149‑1 (MQ=255) cTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGCTCCCAGCGAATTTGCGt > 4:158535/1‑149 (MQ=255) cTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGCTCCCAGCGAATTTGCGt > 5:3418/1‑149 (MQ=255) tACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGCTCCCAGCGAATTTGCGTCAt < 1:217101/149‑1 (MQ=255) cacCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGCTCCCAGCGAATTTGCGTCATCg > 6:296668/1‑149 (MQ=255) acCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGCTCCCAGCGAATTTGCGTCATCgg < 1:271188/149‑1 (MQ=255) cGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGCTCCCAGCGAATTTGCGTCATCGGCTgg < 8:74182/149‑1 (MQ=255) cGAAGCGCGGCGAACGCGCCAGCAGGATTTCAtcgccgcgcttcgtcaccggggtgtacagcaccttggcaggttttgccgaaccgggtgaatcggccgaagactgcctggtgcgcgaagtgcgcgaagaagtggcggtggaggtg < 6:168452‑M2/146‑115 (MQ=255) gAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGtt > 4:145403/1‑98 (MQ=255) gAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGtt < 3:145403/98‑1 (MQ=255) gAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGCTCCCAGCGAATTTGCGTCATCGGCTGGCCGCAAc > 8:105993/1‑149 (MQ=255) gcggcgAACGCGCCAGCAGGATTTCAtcgccgcgcttcgtcaccggggtgtacagcaccttggcaggttttgccgaaccgggtgaatcggccgaagactgcctggtgcgcgaagtgcgcgaagaag < 1:8816‑M2/126‑101 (MQ=255) gcggcgAACGCGCCAGCAGGATTTCAtcgccgcgcttcgtcaccggggtgtacagcaccttggcaggttttgccgaaccgggtgaatcggccgaagactgcctggtgcgcgaagtgcgcgaagaag > 2:8816‑M2/1‑26 (MQ=255) cggcgAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGCTCCCAGCGAATTTGCGTCATCGGCTGGCCGCAACTGCCg > 5:104277/1‑148 (MQ=255) gAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGCTCCCAGCGAATTTGCGTCATCGGCTGGCCGCAACTGCCGCAg > 6:69273/1‑147 (MQ=255) cgcgCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGCTCCCAGCGAATTTGCGTCATCGGCTGGCCGCAACTGCCGCAGAAGCg < 7:105993/149‑1 (MQ=255) gcgcCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGCTCCCAGCGAATTTGCGTCATCGGCTGGCCGCAACTGCCGCAGAAGCGa > 8:29167/1‑149 (MQ=255) gcgcCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGCTCCCAGCGAATTTGCGTCATCGGCTGGCCGCAACTGCCGCAGAAGCGa > 2:165250/1‑149 (MQ=255) cgcCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGCTCCCAGCGAATTTGCGTCATCGGCTGGCCGCAACTGCCGCAGAAGCGAt < 8:80411/149‑1 (MQ=255) cagGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCa > 2:270076/1‑65 (MQ=255) cagGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCa < 1:270076/65‑1 (MQ=255) aTTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGCTCCCAGCGAATTTGCGTCATCGGCTGGCCGCAACTGCCGCAGAAGCGATGCTCGCGGGc < 6:65168/149‑1 (MQ=255) tttCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGCTCCCAGCGAATTTGCGTCATCGGCTGGCCGCAACTGCCGCAGAAGCGATGCTCGCGGGcc > 5:264456/1‑149 (MQ=255) cATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGCTCCCAGCGAATTTGCGTCATCGGCTGGCCGCAACTGCCGCAGAAGCGATGCTCGCGGGCCCa < 5:69273/148‑1 (MQ=255) aTCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGCTCCCAGCGAATTTGCGTCATCGGCTGGCCGCAACTGCCGCAGAAGCGATGCTCGCgg > 6:179082/1‑142 (MQ=255) aTCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGCTCCCAGCGAATTTGCGTCATCGGCTGGCCGCAACTGCCGCAGAAGCGATGCTCGCgg < 5:179082/142‑1 (MQ=255) | TGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCAGTCTTCGGCCGATTCACCCGGTTCGGCAAAACC‑‑TGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAGCTGCGCAGGTCGCAGGGTTGGCAATACATCGCCCGCTCCCAGCGAATTTGCGTCATCGGCTGGCCGCAACTGCCGCAGAAGCGATGCTCGCGGGCCCA > NC_002947/4539683‑4539972 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |