| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4896378 = | 20 (0.400) | 9 (0.210) | 9/216 | NT | 36.9% | intergenic (+11/‑197) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| ? | NC_002947 | 4896467 = | 14 (0.330) | intergenic (+100/‑108) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein | |||||
TTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCACCGCCTCGCTGCTCGCCGCAG > NC_002947/4896326‑4896611 | ttctgttctCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCACTTAGCGGGTAAATCCGCTCCTAAAGGCGCGGACCGGGCGCGGTGCCCCGTAGGAGCGGGTTTAACCGCGAAGAGACCGGCACAgg > 1:269850/1‑146 (MQ=255) aaTGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCACATAGCCGGTAAATACGCTACAAAACGCCCGGACCCTGCCCGGTCCCCCCTACGAGCGGGTTTAACCCCCAAGAGGCCGGCACAAGCAAAAGC‑AAAACCAAAACaat > 6:297037/1‑147 (MQ=255) tcgcAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCtt < 5:297037/145‑1 (MQ=255) cAAAGCGTGATAGCGCCTGCGCCGGCCTAATAGCGGGTAAAAACCCACCAACAGGGGCGGGCCCGGGGCGGTGCCCCGGATGGGCGGGGTTTACAGCCAAAAGGCCCGCACAAAGAGAAGCAAAAACCAAAAAATtttttttttata > 8:14087/1‑143 (MQ=255) cAAAGCGGTATAGCGCCTGAGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGCCGCGGACCGTGCGCGGTCCCCCGTAGTAGCGGGTTTACCCGCTAAGAGGCCGGCACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTc < 7:14087/143‑1 (MQ=38) aaaGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAAcc > 7:164824/1‑149 (MQ=255) cgcCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGt < 1:223560/148‑1 (MQ=255) cggcctcttcgcgggtaaacccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcggatttacccgcgaagagggcggcACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTta > 2:99861‑M2/88‑147 (MQ=255) GCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAGCCCGTAATAACCCACGCGTTATAGt < 5:267789‑M1/149‑1 (MQ=255) tcttcgcgggtaaacccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcggatttacccgcgaagaggccggcGCAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGc > 4:176819‑M2/83‑149 (MQ=255) ttcgcgggtaaacccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcggatttacccgcgaagaggccggcACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTta > 8:31902‑M2/81‑140 (MQ=255) ttcgcgggtaaacccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcggatttacccgcgaagaggccggcACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTta < 7:31902‑M2/60‑1 (MQ=255) gtaaacccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcggatttacccgcgaagaggccggcACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAg < 8:169467‑M2/63‑1 (MQ=255) gtaaacccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcggatttacccgcgaagaggccggcACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAg > 7:169467‑M2/74‑136 (MQ=255) ATCCGCTCCTACAGGCGCTGACCGTTCGCGGTCCCCCGTAGTAGCGGGTTTACCCGCGAAGAGGCCGTCACAGGCAGAAGC‑ATAACCAAACCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGccc > 6:228533‑M1/1‑149 (MQ=255) cTACAGGCGCGGACCGTGCGCGGTCGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTta < 4:185116/121‑1 (MQ=255) cTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTta > 3:185116/1‑121 (MQ=255) cgggggaccgcgcacggtccgcgcctgtaggagcgggtttacccgcgaagaggccggcACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCtt > 8:117620‑M2/59‑148 (MQ=255) aGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAaca < 8:120710/142‑1 (MQ=255) aGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAaca > 7:120710/1‑142 (MQ=255) cgGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAAc < 2:269850/149‑1 (MQ=255) cGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGa > 7:97208/1‑149 (MQ=255) cacggtccgcgcctgtaggagcgggtttacccgcgaagaggccggcACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGAc < 7:117620‑M2/103‑1 (MQ=255) cgcgcctgtaggagcggatttacccgcgaagaggccggcGCAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGt < 3:176819‑M2/110‑1 (MQ=255) gAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAActct > 5:263261/1‑149 (MQ=255) aGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCtt < 6:263261/149‑1 (MQ=255) acccgcgaagaggccggcACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCACCGCCTc > 3:124261‑M2/19‑149 (MQ=255) ccgctaagaggccggcACAGGCATAATC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGccc < 4:271160‑M2/80‑1 (MQ=255) ccgcgaagaggccggcACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGccc > 3:271160‑M2/17‑96 (MQ=255) gcgaagaggccggcACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCACCGCCTCgctg > 2:78457‑M2/15‑149 (MQ=255) cggcACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCACCGCCTCGCTGCTCGCCGCAg < 8:97208‑M2/145‑1 (MQ=255) ggcACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTaa > 2:20087‑M2/4‑42 (MQ=255) ggcACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTaa < 1:20087‑M2/39‑1 (MQ=255) | TTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGC‑ATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCACCGCCTCGCTGCTCGCCGCAG > NC_002947/4896326‑4896611 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |