| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | NC_002947 | 5,555,608 | +GCC | 100% | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5555608 | 1 (0.020) | 28 (0.570) +GCC |
25/252 | NT | 96.6% | intergenic (‑84/+87) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 5555609 = | 1 (0.020) | intergenic (‑85/+86) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer | |||||
ACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCG‑‑‑CC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTT > NC_002947/5555468‑5555754 | actgtgcaggaaattcaggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑gg < 5:180549‑M2/4‑1 (MQ=255) tgcaggaaattcaggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAAtt > 7:179442‑M2/141‑149 (MQ=255) caggaaattcaggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgcaagggccgcatagcggccCCGGGCAatta > 6:97319‑M2/139‑148 (MQ=255) aggaaattcaggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTcc > 5:272892‑M2/138‑149 (MQ=255) ggtcggccttggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGc < 6:10252‑M2/22‑1 (MQ=255) tcggcctgggcagctattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGcaa < 6:187529‑M2/24‑1 (MQ=255) gtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTAt < 6:272892‑M2/42‑1 (MQ=255) tcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGc < 8:179442‑M2/44‑1 (MQ=255) gggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCa < 1:203772‑M2/45‑1 (MQ=255) cttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAgg < 5:97319‑M2/64‑1 (MQ=255) ttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGc < 2:284789‑M2/47‑1 (MQ=255) ttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGc > 1:284789‑M2/84‑130 (MQ=255) tgccgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGa < 7:293195‑M2/75‑1 (MQ=255) gccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTggg > 1:156677‑M2/70‑103 (MQ=255) agcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGc < 2:64187‑M2/44‑1 (MQ=255) agcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGc > 1:64187‑M2/64‑107 (MQ=255) aacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCcac < 5:107687‑M2/69‑1 (MQ=255) gtgGGAGCGGCCTTGTGTACCGAAAAGGCCCCAAAGCGGCCCC‑CGGAAATTACCCGGGTTTGCAACAAACCAGGGGCGGCTATGCAACCCTTTAGCGACCAAAAGCCCACAAACGACCGCGCCCCGATAAGGCCCCGAACTGGccaccg > 4:245940/1‑145 (MQ=255) cggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGgcgc < 6:233467‑M2/115‑1 (MQ=255) gccttgtgtcgcgaaagggccgcatagcggccCC‑GGAAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGgcgcgc < 3:51504‑M2/117‑1 (MQ=255) ccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAAc > 5:41130‑M2/32‑130 (MQ=255) tcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgc > 5:33531‑M2/25‑149 (MQ=255) gcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCCCAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGATGAgccg > 5:333635‑M2/23‑149 (MQ=255) cgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgccgc > 4:256896‑M2/22‑149 (MQ=255) cgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGatcatc < 6:33531‑M2/137‑1 (MQ=255) cgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGatcatc > 8:135056‑M2/13‑149 (MQ=255) gcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATcc < 1:221879‑M2/138‑1 (MQ=255) gcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATcc < 3:175515‑M2/138‑1 (MQ=255) catagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGatcatc > 5:158241‑M2/11‑147 (MQ=255) catagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAACCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGatcatc > 6:179798‑M2/11‑147 (MQ=255) gccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCtt < 1:137727‑M2/146‑1 (MQ=255) | ACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCG‑‑‑CC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTT > NC_002947/5555468‑5555754 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |