New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5877007	26 (0.520)	5 (0.120)	5/210	NT	19.2%	intergenic (+29/+76)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	= 5877041	21 (0.510)					intergenic (+63/+42)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein

TGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCC  >  NC_002947/5876893‑5877188                                                                                                                                                     |                                                                                                                                                     tgACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATccc                                                                                                                                                      >  7:149257/1‑149 (MQ=255)   aCCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCt                                                                                                                                                     >  7:69596‑M2/1‑147 (MQ=255)    ccAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgt                                                                                                                                                   >  5:3244‑M2/1‑146 (MQ=255)     tgaagcggggaccatttacctggtcagtgagccgaacctgttctatgtgttcaagcagccgactgactgatcgcctgtcagggcctgTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTg                                                                                                                                                    <  3:103728‑M1/60‑1 (MQ=255)     cAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgta                                                                                                                                                  >  2:221092‑M2/1‑145 (MQ=255)     cAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgta                                                                                                                                                  >  6:152591‑M2/1‑145 (MQ=255)        agcggggaccatttacctggtcagtgagccgaacctgttctatgtgttcaagcagccgactgactgatcgcctgtcagggcctgTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGa                                                                                                                                               >  7:34395‑M1/85‑149 (MQ=255)            gggaccatttacctggtcagtgagccgaacctgttctatgtgttcaagcagccgactgactgatcgcctgtcagggcctgTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑Cgg                                                                                                                                          >  4:103728‑M1/81‑149 (MQ=255)                  gcggcgcggcCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCCCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttac                                                                                                                                     <  8:246514‑M2/149‑18 (MQ=255)                      cgcggcCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGTCCTGGAACCGTGGCGATCCCtgtaggagcgggtttacccgc                                                                                                                                 >  8:149257‑M2/1‑128 (MQ=255)                          gccggcGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCAACAAGGTACCCCACCGGCCAGGAACCGTGGCGCTCCCggtaggagcgggtttacccgcgaa                                                                                                                              <  8:56003‑M2/148‑25 (MQ=255)                           ccggcGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAACGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACa                                                                                                                           <  3:203732/149‑1 (MQ=255)                             ggcggATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAgg                                                                                                                         <  7:216667/149‑1 (MQ=255)                                 gATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCt                                                                                                                     <  7:123726/149‑1 (MQ=255)                                          ctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCAGGAACCGTGGCGATCCCTGTAGGAG‑CGGGGTTACCCGCGCACAGGCCCTGACAGGCGa                                                                                                            >  8:243068/1‑149 (MQ=255)                                               ggccACCGCTGAAGGCGTGAATCGCCTGAAGGCCGAGTAAACCCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGCACCCGTGGCGATCCCTGTAGCAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtcagt                                                                                                       <  3:7681/146‑1 (MQ=255)                                                ggCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtcagt                                                                                                       <  7:251926/148‑1 (MQ=255)                                                   aCCGCTGAAGGCGTGAAGCGCCTGAATGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATcagtcagt                                                                                                   <  5:310648/149‑1 (MQ=255)                                                          aaGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGgctgc                                                                                            <  5:288304/149‑1 (MQ=255)                                                          aaGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAAACCCCAACAAAAAAATAAACCACCCCCCAGGAACCCTTGCGATACCAGTAGGAGACGGGTTTAACC‑CCAACACGCCCAGACACGCGAACAGTAAGTAGgcggg                                                                                            >  4:146851/1‑146 (MQ=255)                                                               gTGAAGAGCCTGAAGTCCGAGTAAACCCCTTCGCGGGTAAACCCGCTCCTACACGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGTAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGaa                                                                                       <  8:38727/149‑1 (MQ=255)                                                                           aaGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACa                                                                            <  3:106434/148‑1 (MQ=255)                                                                           aaGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAg                                                                           <  7:56003/149‑1 (MQ=255)                                                                                cGAGTAAAACCCTTCGCGGGTAAACCCCCTCCAACAATGTAACCCACCCGCCGGGCAACGTGGCGATCCCGGTAAGAG‑CCGGGTTAACCGCGCACACGCCCAGAAACGCGAAAATTCAGTCGGCTGCTTGAACACATAGAAAAGGttag                                                                      >  6:141332/1‑147 (MQ=255)                                                                                cGAGTAAAACCCTTCGCGGGTAAACCCCCACCAAAAAAGTACCCCCCCCGCCTGGAACCCTGGCGAACCCACGAGGAC‑CCGGGTTACCCCCGCACACCCCCAGCCAGGCGATCAGTCACTCGGCGGCTTGAAAACAAATAACACGttag                                                                      >  8:147698/1‑147 (MQ=255)                                                                                  aGTAAAACCCTTCGCGGGTAAAACCCCTCCAACAAAGTACCCCACCGGCCAGGAACCCAGGCGATCCCAGTAGGCG‑CGGGTTTAACCGCGAACAAGCCCGGACAGGCGATCAGTCACTCGGCGGCTTGAACACAAATAACAGGTTAGGc                                                                    >  2:239682/1‑149 (MQ=255)                                                                                          ccTTCGCGGGTAAACCCCCGACAAAAAAGTACCCCCCCCGCCTGGAACCGTGGCGCTACCGGGAGGAG‑CGGGGTTAACCCCGAACAGGCCCTGACAGGCGCTCAGTCAGTAGGCTGGTTGAACACATAAAACACGGTAGGCTCACAGAc                                                            >  2:14231/1‑149 (MQ=255)                                                                                            TTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑Cgg                                                                                                                                          <  1:146851‑M1/69‑1 (MQ=255)                                                                                            TTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑Cgg                                                                                                                                          >  2:146851‑M1/1‑69 (MQ=255)                                                                                              CGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCa                                                          >  7:246514‑M1/1‑147 (MQ=255)                                                                                              CGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAg                                                         >  1:239682‑M1/1‑148 (MQ=255)                                                                                                   GTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAAt                                                   >  7:147698‑M1/1‑149 (MQ=255)                                                                                                    TAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATg                                                  >  7:43894‑M1/1‑149 (MQ=255)                                                                                                         ccGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagcagatccgccggccgcgccgcgaacag                                              <  4:109626‑M2/149‑105 (MQ=255)                                                                                                         CCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTccc                                             >  5:141332‑M1/1‑149 (MQ=255)                                                                                                          cGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagcagatccgccggccgcgccgcgaacagg                                             <  7:283930‑M2/149‑106 (MQ=255)                                                                                                               cTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagcagatccgccggccgcgccgcgaacaggccgtt                                        <  5:312845‑M2/149‑111 (MQ=255)                                                                                                               CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCtt                                        <  4:204802‑M1/148‑1 (MQ=255)                                                                                                               CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCtt                                        <  2:43384‑M1/148‑1 (MQ=255)                                                                                                                 ACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGATGCTTGAACACATAGAACAGGTTCGGCTCACTTACAAgg                                                        <  2:202708‑M1/130‑1 (MQ=255)                                                                                                                      gTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGc                                                                    >  1:41058/1‑113 (MQ=255)                                                                                                                      gTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGc                                                                    <  2:41058/113‑1 (MQ=255)                                                                                                                                     ggAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGcc                 >  6:176933/1‑149 (MQ=255)                                                                                                                                      gAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCt                >  4:237278/1‑149 (MQ=255)                                                                                                                                        aCCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAAAATGCCCTTACAGGCGATCAGTCAGTCGGCTGCTTTAACACATAGAACAGGTTCGGCTCACTTACCATGTAAATTGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGc              <  3:146851/149‑1 (MQ=255)                                                                                                                                         ccGTGGCGATCCCtgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagcagatccgccggccgcgccgcgaacaggccgttggtcaccacgccgacgatggcgttga              >  3:109626‑M2/1‑13 (MQ=255)                                                                                                                                            tGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTg               <  2:153377/144‑1 (MQ=255)                                                                                                                                            tGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTg               >  1:153377/1‑144 (MQ=255)                                                                                                                                              gCGATCCCtgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagcagatccgccggccgcgccgcgaacaggccgttggtcaccacgccgacgatggcgttgatctg          >  8:283930‑M2/1‑8 (MQ=255)                                                                                                                                                    ccTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGcc  >  6:111491/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCC  >  NC_002947/5876893‑5877188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.