Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,264,918 | A→T | 7.1% | D44V (GAC→GTC) | vanB → | vanillate O‑demethylase oxidoreductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,264,918 | 0 | A | T | 7.1% | 157.5 / 3.3 | 56 | D44V (GAC→GTC) | vanB | vanillate O‑demethylase oxidoreductase |
Reads supporting (aligned to +/- strand): ref base A (25/27); new base T (2/2); total (27/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.84e-01 |
TGAGGAACAGCCGACATGATCGATGCCGTAGTGGTATCCCGTAACGATGAAGCGCAGGGTATCTGCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCGGTTCTCGTAGCCTGCACGAACAGGTGCAAGCCGGTGCCCGGCTGCGTATCAGTGCG > NC_002947/4264773‑4265066 | tgAGGAACAGCCGACATGATCGATGCCGTAGTGGTATCCCGTAACGATGAAGCGCAGGGTATCTGCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACgg > 7:89865/1‑149 (MQ=255) tgAGGAACAGCCGACATGATCGATGCCGTAGTGGTATCCCGTAACGATGAAGCGCAGGGTATCTGCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGCGCACCAGCCCGTCgg > 7:2653/1‑149 (MQ=255) aaCAGCCGACATGATCGATGCCGTAGTGGTATCCCGTAACGATGAAGCGCAGGGTATCTGCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTg < 2:208832/148‑1 (MQ=255) aCAGCCGACATGATCGATGCCGTAGTGGTATCCCGTAACGATGAAGCGCAGGGTATCTGCAGCTTCGAGCTGGCCGCGGCGGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGt < 1:124132/149‑1 (MQ=255) aCAGCCGACATGATCGATGCCGTAGTGGTATCCCGTAACGATGAAGCGCAGGGTATCTGCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGCGCACCAGCCCGTCGGGCAgg < 8:2653/148‑1 (MQ=255) cAGCCGACATGATCGATGCCGTAGTGGTATCCCGTAACGATGAAGCGCAGGGTATCTGCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTg > 1:184784/1‑149 (MQ=255) ccGACATGATCGATGCCGTAGTGGTATCCCGTAACGATGAAGCGCAGGGTATCTGCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGCGCACCAGCCCGTCGGGCAGGTgcac < 3:230120/149‑3 (MQ=255) gACATGATCGATGCCGTAGTGGTAGCCCGTAACGATGAAGCGCAGGGTATCTGCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCa < 8:193944/149‑1 (MQ=255) aCATGATCGATGCCGTAGTGGTATCCTGTAACGATGAAGCGCAGGGTATCTGCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAg > 3:193078/1‑149 (MQ=255) aTGATCGATGCCGTAGTGGTATCCCGTAACGATGAAGCGCAGGGTATCTGCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACg < 6:42551/133‑1 (MQ=255) aTGATCGATGCCGTAGTGGTATCCCGTAACGATGAAGCGCAGGGTATCTGCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACg > 5:42551/1‑133 (MQ=255) cGTAGTGGTATCCCGTAACGATGAAGCGCAGGGTATCTGCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTc > 7:243825/1‑141 (MQ=255) cGTAGTGGTATCCCGTAACGATGAAGCGCAGGGTATCTGCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTc < 8:243825/141‑1 (MQ=255) gTAACGATGAAGCGCAGGGTATCTGCAGCTNCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCgaagaa > 1:26659/1‑149 (MQ=255) tAACGATGAAGCGCAGGGTATCTGCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAAc < 6:146554/149‑1 (MQ=255) aaCGATGAAGCGCAGGGTATCTGCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCg < 1:159994/126‑1 (MQ=255) aaCGATGAAGCGCAGGGTATCTGCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCCACGGGCTGGTGCGCCAGTATTCg > 2:159994/1‑126 (MQ=255) gATGAAGCGCAGGGTATCTGCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCAcccc < 8:114470/138‑1 (MQ=255) gATGAAGCGCAGGGTATCTGCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCAcccc > 7:114470/1‑138 (MQ=255) ggTATCTGCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGAt > 2:206800/1‑149 (MQ=255) gTATCTGCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGAtt > 8:39611/1‑149 (MQ=255) tGCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCg > 2:235581/1‑148 (MQ=255) gCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTAATCGGTGTGCAACCCCCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGt > 2:140880/1‑148 (MQ=255) gAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACg < 1:206800/148‑1 (MQ=255) gCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGAcc > 1:242718/1‑149 (MQ=255) gCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAAc > 8:210415/1‑141 (MQ=255) gCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAAc < 7:210415/141‑1 (MQ=255) cgcgGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCtt < 1:235581/149‑1 (MQ=255) cAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCgg < 2:26659/149‑1 (MQ=255) aTGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGTTTCGCGGGGc < 8:108701/149‑1 (MQ=255) tGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCg < 4:90578/149‑1 (MQ=255) cAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCgg < 1:291193/134‑1 (MQ=255) cAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCgg > 2:291193/1‑134 (MQ=255) ctgctgCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCg < 5:136633/101‑1 (MQ=255) ctgctgCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCg > 6:136633/1‑101 (MQ=255) ctgcCGGCGTTCAGCGCCGGCGCCCATATCGACGTGTACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCGGTTCTCGTAg > 5:114287/1‑149 (MQ=255) ctgcCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCGGTTCTCGTAg > 4:110745/1‑149 (MQ=255) gCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCGGTTCTCGTAGCCTGCa > 5:283654/1‑149 (MQ=255) tCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCgg < 5:211811/130‑1 (MQ=255) tCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCgg > 6:211811/1‑130 (MQ=255) cAGCGCCGGCGCCCATATCGACGTGTACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCGGTTCTCGTAGCCTGCACGaa < 6:114287/148‑1 (MQ=255) aGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCGGTTCTCGTAGCCTGCACGAAc < 4:193078/148‑1 (MQ=255) cggcGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTAGCTGTGCAACCAACCCGAAGAACGCCACCACGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCGGTTCTCGTAGCCTGCACGAACa < 1:257881/146‑1 (MQ=255) gcCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCGGTTCTCGTAGCCTGCACGAACAGGTGCAAGc < 7:39611/149‑1 (MQ=255) ccATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCGGTTCTCGTAGCCTGCACGAACAGGTGCAAGCCg < 2:151246/149‑1 (MQ=255) ccATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCGGTTCTCGTAGCCTGCACGAACAGGTGCAAGCCg < 1:299267/149‑1 (MQ=255) atCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCGGtt < 2:42383/115‑1 (MQ=255) atCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCGGtt > 1:42383/1‑115 (MQ=255) gACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCGGTTCTCGTAGCCTGCACGAACAGGTGCAAGCCGGTGCCCg > 4:185251/1‑149 (MQ=255) tggcgCACCAGCCCGTCGGGCAGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCGGTTCTCGTAGCCTGCACGAACAGGTGCAAGCCGGTGCCCgg > 8:107839/5‑149 (MQ=255) gTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCGGTTCTCg < 2:28248/113‑1 (MQ=255) gTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCGGTTCTCg > 1:28248/1‑113 (MQ=255) gTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCGGTTCTCGTAGCCTGCACGAACAGGTGCAAGCCGGTGCCCGGCt > 4:126064/1‑149 (MQ=255) aCCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCGGTTCTCGTAGCCTGCACGAACAGGTGCAAGCCGGTGCCCGGCTGCg > 6:177398/1‑148 (MQ=255) cccGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑CCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCGGTTCTCGTAGCCTGCACGAACAGGTGCAAGCCGGTGCCCGGCTGCGTATCa < 2:184784/148‑1 (MQ=255) cGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCGGTTCTCGTAGCCTGCACGAACAGGTGCAAGCCGGTGCCCGGCTGCGTATCAGTg < 8:89865/149‑1 (MQ=255) aCGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCGGTTCTCGTAGCCTGCACGAACAGGTGCAAGCCGGTGCCCGGCTGCGTATCAGTgcg < 6:283654/149‑1 (MQ=255) | TGAGGAACAGCCGACATGATCGATGCCGTAGTGGTATCCCGTAACGATGAAGCGCAGGGTATCTGCAGCTTCGAGCTGGCCGCGGCAGATGGCAGCCTGCTGCCGGCGTTCAGCGCCGGCGCCCATATCGACGTGCACCTGCCCGACGGGCTGGTGCGCCAGTATTCGCTGTGCAACCACCCCGAAGAACGCCA‑‑TCGCTATCTGATTGGCGTACTCAACGACCCGGCTTCGCGGGGCGGTTCTCGTAGCCTGCACGAACAGGTGCAAGCCGGTGCCCGGCTGCGTATCAGTGCG > NC_002947/4264773‑4265066 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |