Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,362,614 | C→G | 9.8% | intergenic (‑135/‑301) | PP_5634 ← / → adhP | hypothetical protein/alcohol dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,362,614 | 0 | C | G | 9.8% | 135.1 / 5.1 | 50 | intergenic (‑135/‑301) | PP_5634/adhP | hypothetical protein/alcohol dehydrogenase |
Reads supporting (aligned to +/- strand): ref base C (22/23); new base G (3/2); total (25/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TTCGTCGCGCATGCTGGCTCCTGGGATAATGGCAGGCCTGTATAGGCTGATCAGGGTGCCGGGTCAATGCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTT > NC_002947/4362468‑4362762 | ttCGTCGCGCATGCTGGCTCCTGGGATAATGGCAGGCCTGTATAGGCTGATCAGGGTGCCGGGTCAATGCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCATTCCAt > 6:306881/1‑149 (MQ=255) tcgCGCATGCTGGCTCCTGGGATAATGGCAGGCCTGTATAGGCTGATCAGGGTGCCGGGTCAATGCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCg > 1:9825/1‑149 (MQ=255) gcgcATGCTGGCTCCTGGGATAATGGCAGGCCTGTATAGGCTGATCAGGGTGCCGGGTCAATGCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCCCAACCTGCAGGCTCTCCCTTCAAACCTCTTTAGCCCGCCTTCCATGGCggg > 5:221961/1‑149 (MQ=255) cTGGGATAATGGCAGGCCTGTATAGGCTGATCAGGGTGCCGGGTCAATGCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGAcc < 3:32111/148‑1 (MQ=255) aTAATGGCAGGCCTGTATAGGCTGATCAGGGTGCCGGGTCAATGCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTgcgc < 7:259617/149‑1 (MQ=255) aTAATGGCAGGCCTGTATAGGCTGATCAGGGTGCCGGGTCAATGCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCATGGAAGGCGGGc < 4:33678/131‑1 (MQ=255) aTAATGGCAGGCCTGTATAGGCTGATCAGGGTGCCGGGTCAATGCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCATGGAAGGCGGGc > 3:33678/1‑131 (MQ=255) aTAATGGCAGGCCTGTATAGGCTGATCAGGGTGCCGGGTCAATGCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCATGGAAGGCGGGc < 2:318815/131‑1 (MQ=255) aTAATGGCAGGCCTGTATAGGCTGATCAGGGTGCCGGGTCAATGCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCATGGAAGGCGGGc > 1:318815/1‑131 (MQ=255) tAATGGCAGGCCTGTATAGGCTGATCAGGGTGCCGGGTCAATGCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCa > 8:97694/1‑149 (MQ=255) aTGGCAGGCCTGTATAGGCTGATCAGGGTGCCGGGTCAATGCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACt < 1:126755/149‑1 (MQ=255) tGGCACGCCTGTATAGGCTGATCAGGGTGCCGGGTCAATGCGAGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTTCAGGCTCTCCCTTCAAACGTCTATATCCAGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACtt > 5:244175/1‑149 (MQ=255) ggCAGGCCTGTATAGGCTGATCAGGGTGCCGGGTCAATGCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTc > 5:330156/1‑149 (MQ=255) cTGTATAGGCTGATCAGGGTGCCGGGTCAATGCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAg < 2:9825/149‑1 (MQ=255) gTATAGGCTGATCAGGGTGCCGGGTCAATGCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAgat > 1:31863/1‑149 (MQ=255) gCTGATCAGGGTGCCGGGTCAATGCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGAtgatga > 2:82813/1‑148 (MQ=255) gggTGCCGGGTCAATGCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCAt < 6:330156/149‑1 (MQ=255) gggTGCCGGGTCAATGCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCAt < 1:2105/149‑1 (MQ=255) ggTGCCGGGTCAATGCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCAt > 8:184380/1‑148 (MQ=255) ggTCAATGCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCAtgacctgac < 2:31863/149‑1 (MQ=255) gCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGc < 1:10348/116‑1 (MQ=255) gCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGc > 2:10348/1‑116 (MQ=255) tGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGaaa < 5:295223/149‑1 (MQ=255) gCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTc < 1:312492/148‑1 (MQ=255) gCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTc < 7:184380/148‑1 (MQ=255) gCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTc < 5:47863/148‑1 (MQ=255) cTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCGATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGa > 1:101018/1‑149 (MQ=255) ttAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAgat < 2:150276/110‑1 (MQ=255) ttAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAgat > 1:150276/1‑110 (MQ=255) cTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCg > 8:241150/1‑148 (MQ=255) cTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCg > 2:121749/1‑148 (MQ=255) gTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATgg < 1:121749/149‑1 (MQ=255) tAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATggg > 5:78030/1‑148 (MQ=255) cggaccggCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATGGGCacac < 7:97694/149‑1 (MQ=255) gcgcAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCt < 5:120394/149‑1 (MQ=255) gCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAg < 1:46485/76‑1 (MQ=255) gCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAg > 2:46485/1‑76 (MQ=255) cAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTAt < 7:71648/148‑1 (MQ=255) gCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTc > 2:29456/1‑149 (MQ=255) ccTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAg > 5:124375/1‑149 (MQ=255) cTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATc < 4:76283/109‑1 (MQ=255) cTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATc > 3:76283/1‑109 (MQ=255) cTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATGGACACACTGGCCCTGCTCCGTATGTTCTTGCAGc > 1:65428/1‑149 (MQ=255) tCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCgg > 1:303181/1‑110 (MQ=255) tCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCgg < 2:303181/110‑1 (MQ=255) aaCGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCAtgacctga > 7:145217/1‑83 (MQ=255) aaCGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCAtgacctga < 8:145217/83‑1 (MQ=255) gTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCa > 2:203363/1‑149 (MQ=255) tCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCAt < 1:203363/149‑1 (MQ=255) cTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTGCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATc < 4:35463/149‑1 (MQ=255) cATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAgatg < 3:272806/43‑1 (MQ=255) cATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAgatg > 4:272806/1‑43 (MQ=255) cATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCGGCAAGGATGCGGCGGGctgc < 6:136252/149‑3 (MQ=255) | TTCGTCGCGCATGCTGGCTCCTGGGATAATGGCAGGCCTGTATAGGCTGATCAGGGTGCCGGGTCAATGCGTGGTCGCTTAATCCTGGGTTAACCGGACCGGCGCAACCTGCAGGCTCTCCCTTCAAACGTCTTTTGCCCGCCTTCCATGGCGGGCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTT > NC_002947/4362468‑4362762 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |