Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,534,635 | G→A | 7.4% | intergenic (+73/‑47) | cpo → / → PP_4022 | non‑heme chloroperoxidase/hypothetical protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,534,635 | 0 | G | A | 7.4% | 154.5 / 2.2 | 54 | intergenic (+73/‑47) | cpo/PP_4022 | non‑heme chloroperoxidase/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (26/24); new base A (2/2); total (28/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.71e-01 |
CCCGCATGGCATGCCCACCACCCATGCCGATGTGATCAATGCGGATTTGCTCGCCTTCATCCAAAGCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATCCTGAACGTGTTGACAGCCATGCTCACATTCAAACAAACACCTGACTCAGCCGC > NC_002947/4534493‑4534776 | cccGCTTGGCATTGCCACCCCCCATGGCGTTTTTATCAATGGTGATTTGCTCGCCTTCATCCAAAGCTTATGTGAACGCCTGGACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTtggtgg < 6:267650/147‑1 (MQ=255) cccGCATGGCATGCCCACCACCCATGCCGATGTGATCAATGCGGATTTGCTCGCCTTCATCCAAAGCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCGCTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTtggtgg < 1:169311/147‑1 (MQ=255) cccGCATGGCAGGCCCACCACCCATGCCGATGTGATCAATGCGGATTTGCTCGCCTTCATCCAAAGCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCt < 2:64657/149‑1 (MQ=255) ccGCATGGCATGCCCACCACCCATGCCGATGTGATCAATGCGGATTTGCTCGCCTTCATCCAAAGCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCtt > 1:237890/1‑149 (MQ=255) catggcatgCCCACCACCCATGCCGATGTGATCAATGCGGATTTGCTCGCCTTCATCCAAAGCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTtgca < 1:11701/149‑1 (MQ=255) catggcatgCCCACCACCCATGCCGATGTGATCAATGCGGATTTGCTCGCCTTCATCCAAAGCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTtgca < 5:159433/149‑1 (MQ=255) tgCCCACCACCCATGCCGATGTGATCAATGCGGATTTGCTCGCCTTCATCCAAAGCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTtg > 7:107477/1‑140 (MQ=255) tgCCCACCACCCATGCCGATGTGATCAATGCGGATTTGCTCGCCTTCATCCAAAGCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTtg < 8:107477/140‑1 (MQ=255) ccaccaCCCATGCCGATGTGATCAATGCGGATTTGCTCGCCTTCATCCAAAGCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAg > 7:12519/1‑149 (MQ=255) ccaccaCCCATGCCGATGTGATCAATGCGGATTTGCTCGCCTTCATCCAAAGCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACCAAGTGGCtcatgggg < 4:145659/142‑8 (MQ=255) ccaccaCCCATGCCGATGTGATCAATGCGGATTTGCTCGCCTTCATCCAAAGCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACCAAGTGGCtcatgggg > 3:145659/1‑135 (MQ=255) accCATGCCGATGTGATCAATGCGGATTTGCTCGCCTTCATCCAAAGCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGtt < 6:105989/149‑1 (MQ=255) tGCCGATGTGATCAATGCGGATTTGCTCGCCTTCATCCAAAGCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGa‑aa < 8:134725/149‑1 (MQ=255) gATCAATGCGGATTTGCTCGCCTTCATCCAAAGCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCGTGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCAtt > 6:189371/1‑148 (MQ=255) aTCAATGCGGATTTGCTCGCCTTCATCCAAAGCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTCTTCAGAGACCCGCTCCCCCATGAGCCACTTGGAGGCTTGCACTGCACTTAGGGGTTAGA‑AACTAGCAatt > 6:196373/1‑148 (MQ=255) aaTGCGGATTTGCTCGCCTTCATCCAAAGCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCGTGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTAc < 5:189371/149‑1 (MQ=255) gCCTTCATCCAAAGCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACCAAGTGGCt < 2:143575/97‑1 (MQ=255) gCCTTCATCCAAAGATGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACCAAGTGGCt > 1:143575/1‑97 (MQ=255) ttCATCCAAAGCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGAGc > 2:161016/1‑148 (MQ=255) aaaGCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATAc > 1:178705/1‑148 (MQ=255) aaaGCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATAc > 8:26528/1‑148 (MQ=255) aGCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGAGCAAAATACGAt < 1:161016/149‑1 (MQ=255) gCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTGCTGTTGAGAGACCCGCGCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAATTACGATg < 5:196373/149‑1 (MQ=255) cTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATga < 2:237890/149‑1 (MQ=255) gATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGAt > 5:162238/1‑145 (MQ=255) aTGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATgaga < 8:12519/148‑1 (MQ=255) cTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCgg > 2:272452/1‑122 (MQ=255) cACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATc > 6:73068/1‑149 (MQ=255) aCGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGa > 4:19340/1‑129 (MQ=255) aCGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGa < 3:19340/129‑1 (MQ=255) ggTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATCCTGa < 5:73068/149‑1 (MQ=255) cTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATcc > 6:222630/1‑143 (MQ=255) cTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATcc < 5:222630/143‑1 (MQ=255) tttttGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATc < 4:89735/141‑1 (MQ=255) tttttGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATc > 3:89735/1‑141 (MQ=255) ttttGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATCCTGAACgtg > 2:93339/1‑149 (MQ=255) tttGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATCCTGAACgt < 1:134062/147‑1 (MQ=255) gTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTAc > 8:227807/1‑88 (MQ=255) aCTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATCCTGAACGTGTTGACAGCCa > 4:32946/1‑149 (MQ=255) cTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGAt > 8:188318/1‑111 (MQ=255) cTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGAt < 7:188318/111‑1 (MQ=255) cTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATCCTGAACGTGTTGACAGCCAt > 2:282927/1‑149 (MQ=255) aGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATCCTGAACGTGTTGACAGCCATGc < 1:282927/148‑1 (MQ=255) aGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATCCTGAACGTGTTGACAGCCATGCt < 1:93339/149‑1 (MQ=255) gTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATCCTGAACGTGTTGACAGCCATGCTc < 7:26528/149‑1 (MQ=255) cTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATCCTGAACGTGTTGACAGCCATGCTcaca > 7:175147/1‑149 (MQ=255) cTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATCCTGAACGTGTTGACAGCCATGCTcaca > 7:21474/1‑149 (MQ=255) gagaCCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATCCTGAACGTGTTGACAGCCATGCTCACATTcaaac < 8:175147/149‑1 (MQ=255) ccGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCAGTCAACTCATCCTGAACGTGTTGACAGCCATGCTCACATTCAaacaaaca > 6:333571/1‑149 (MQ=255) ccGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATCCTGAACGTGTTGACAGCCATGCTCACATTCAaacaaaca > 4:63058/1‑149 (MQ=255) ccGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATCCTGAACGTGTTGACAGCCATGCTCACATTCAaacaaaca > 2:66073/1‑149 (MQ=255) ccccATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATCCTGAACGTGTTGACAGCCATGCTCACATTCAAACAAACACCTGa < 6:121378/148‑1 (MQ=255) ccccATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATCCTGAACGTGTTGACAGCCATGCTCACATTCAAACAAACACCTGa < 3:63058/148‑1 (MQ=255) cccATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATCCTGAACGTGTTGACa > 4:32140/1‑118 (MQ=255) cccATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATCCTGAACGTGTTGACa < 3:32140/118‑1 (MQ=255) ccACTTGGTGGCTTGCACTGCACTTAGGGGTTTGATAACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATCCTGAACGTGTTGACAGCCATGCTCACATTCAAAAAAACACCTGACTCAgccgc > 1:211130/1‑149 (MQ=255) | CCCGCATGGCATGCCCACCACCCATGCCGATGTGATCAATGCGGATTTGCTCGCCTTCATCCAAAGCTGATGTGAACGCCTGCACGGGTCTTTTTGCAGTCACTAAGTCCTGTTGAGAGACCCGCTCCCCCATGAGCCACTTGGTGGCTTGCACTGCACTTAGGGGTTTGA‑AACTAGCATTTCTACCAGTTGCTCATCCGGGCAAAATACGATGAGATCACTCAACTCATCCTGAACGTGTTGACAGCCATGCTCACATTCAAACAAACACCTGACTCAGCCGC > NC_002947/4534493‑4534776 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |