Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,551,474 | G→C | 7.6% | Q281H (CAG→CAC) | pydA → | NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,551,474 | 0 | G | C | 7.6% | 154.3 / 2.9 | 52 | Q281H (CAG→CAC) | pydA | NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA |
Reads supporting (aligned to +/- strand): ref base G (20/28); new base C (2/2); total (22/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.15e-01 |
GTTCGGCAGTGAAGCCGATTGCCTTGAACATGGTGGCGGAAATCGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGAAGCGTTCCGCGGGCAGGCGGTGGGGCATACCACCGACTGGAAATACCTG > NC_002947/4551326‑4551621 | gTTCGGCAGTGAAGCCGATTGCCTTGAACATGGTGGCGGAAATCGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAg > 2:183897/1‑149 (MQ=255) gTTCGGCAGTGAAGCCGATTGCCTTGAACATGGTGGCGGAAATCGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAg > 6:282493/1‑149 (MQ=255) ggCAGTGAAGCCGATTGCCTTGAACATGGTGGCGGAAATCGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGgtgt > 3:29143/1‑149 (MQ=255) ggCAGTGAAGCCGATTGCCTTGAACATGGTGGCGGAAATCGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGgtgt < 4:242734/149‑1 (MQ=255) aGTGAAGCCGATTGCCTTGAACATGGTGGCGGAAATCGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCa > 1:153169/1‑149 (MQ=255) aaGCCGATTGCCTTGAACATGGTGGCGGAAATCGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCAcggc < 7:236242/149‑1 (MQ=255) aaGCCGATTGCCTTGAACATGGTGGCGGAAATCGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCACACCTGCAcggc > 1:227957/1‑149 (MQ=255) gCCGATTGCCTTGAACATGGTGGCGGAAATCGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCAcggcgg < 3:5330/149‑1 (MQ=255) ccGATTGCCTTGAACATGGTGGCGGAAATCGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCACACCTGCAcggcgcc < 2:227957/149‑3 (MQ=255) ttGCCTTGAACATGGTGGCGGAAATCGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGAtg > 3:54140/1‑149 (MQ=255) ccTTGAACATGGTGGCGGAAATCGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGAtgctg < 1:25278/149‑1 (MQ=255) cTTGAACATGGTGGCGGAAATCGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGAtgctg > 7:120994/1‑148 (MQ=255) gAACATGGTGGCGGAAATCGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCAt < 6:59627/148‑1 (MQ=255) aCATGGTGGCGGAAATCGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATgg < 3:23879/148‑1 (MQ=255) aTGGTGGCGGAAATCGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGcgt > 6:198859/1‑147 (MQ=255) gtggCGGAAATCGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTcc < 4:29143/148‑1 (MQ=255) tggCGGAAATCGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTcc < 3:155135/147‑1 (MQ=255) tggCGGAAATCGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTcc > 4:155135/1‑147 (MQ=255) ggAAATCGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTAtcg < 4:181886/149‑1 (MQ=255) aaaTCGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTAtcgtc > 8:147256/1‑149 (MQ=255) cGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTAtcgtc > 3:189576/1‑145 (MQ=255) cGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTAtcgtc < 4:189576/145‑1 (MQ=255) cccGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAg > 7:224517/1‑148 (MQ=255) ccGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGa > 3:88394/1‑149 (MQ=255) gcgGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTgg < 8:11891/149‑1 (MQ=255) gcgGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGGGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTgg < 3:150716/149‑1 (MQ=255) cgGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGc < 7:147256/149‑1 (MQ=255) ggggCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCa < 1:183897/149‑1 (MQ=255) aTTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCtggatgga < 4:54140/149‑1 (MQ=255) cATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATg < 8:120994/149‑1 (MQ=255) tGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATgg < 1:318012/147‑1 (MQ=255) cATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCa < 1:201870/149‑1 (MQ=255) gCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGAAGCGt > 4:50014/1‑149 (MQ=255) tGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGAAGCGTTcc > 1:304345/1‑149 (MQ=255) cgccgcCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGAAGCGTTCcgcg < 8:224517/149‑1 (MQ=255) gccgccGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGc > 6:59149/1‑128 (MQ=255) gccgccGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGc < 5:59149/128‑1 (MQ=255) cgccgAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGAAGCGTTCCGCggg > 1:47286/1‑148 (MQ=255) gTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGAATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGAAGCGTTCCGCGGGCAGGCgg > 1:31920/1‑149 (MQ=255) cATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGAAGCGTTCCGCGGGCAGGCGGTgg > 5:93437/1‑149 (MQ=255) aTGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGAAGCGTTCCGCGGGCAGGCGGTggg < 3:50014/149‑1 (MQ=255) aTGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGAAGCGTTCCGCGGGCAGGCGGTggg < 5:282493/149‑1 (MQ=255) aTGGCCTTGGGCAGTGGCGCCGGGCAGGTGTGGACGGCGGCGATGGTGGATGGGGTACGGATGGTGGAGGACCTGCAGGACGGCCGGGCACCCGGGTTGGAACACCAAGGGGATGGCACGGTCGCAGCGTTCCCCGGGCCGGCGGTggg > 2:306029/1‑149 (MQ=255) tGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGAAGCGTTCCGCGGGCAGGCGGTgggg < 5:198859/149‑1 (MQ=255) cTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGAAGCGTTCCGCGGGCAGGCGGTGGGGCATa > 5:259397/1‑149 (MQ=255) ttGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGAAGCGTTCCGCGGGCAGGCGGTGGGGCATac > 7:101040/1‑149 (MQ=255) gggCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGAAGCGTTCCGCGGGCAGGCGGTGGGGCATacc < 6:151069/148‑1 (MQ=255) tcgccgcCGTGCACACCTGCACGGC‑GCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGAAGCGTTCCGCGGGCAGGCGGTGGGGCATaccac < 3:245528/140‑1 (MQ=255) tcgccgcCGTGCACACCTGCACGGC‑GCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGAAGCGTTCCGCGGGCAGGCGGTGGGGCATaccac > 4:245528/5‑144 (MQ=255) gTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGAAGCGTTCCGCGGGCAGGCGGTGGGGCATACCACCGAc < 1:306029/149‑1 (MQ=255) tGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGAAGCGTTCCGCGGGCAGGCGGTGGGGCATACCACCGACt < 3:246750/149‑1 (MQ=255) gCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGaa > 3:121376/1‑103 (MQ=255) gCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGaa < 4:121376/103‑1 (MQ=255) aGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGAAGCGTTCCGCGGGCAGGCGGTGGGGCATACCACCGACTGGAAATACCTg < 2:47286/149‑1 (MQ=255) ggTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGAAGCGTTCCGCGGGCAGGCGGTGGGGCATACCACCGACTGGAAATACCt < 6:326899/147‑1 (MQ=255) ggTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGAAGCGTTCCGCGGGCAGGCGGTGGGGCATACCACCGACTGGAAATACCt > 5:326899/1‑147 (MQ=255) | GTTCGGCAGTGAAGCCGATTGCCTTGAACATGGTGGCGGAAATCGCCCGCGACCCGGAAACGCGGGGCTTGCCGATTTGTGGCATTGGCGGCATCGGCAACTGGCGTGACGCCGCCGAGTTCATGGCCTTGGGCAGTGGCGCCGTGCAGGTGTGCACGGCGGCGATGCTGCATGGCTTCCGTATCGTCGAGGACATGCAGGACGGCCTGGCACGCTGGATGGACCAGCATGGGCATGCCACTGTCGAAGCGTTCCGCGGGCAGGCGGTGGGGCATACCACCGACTGGAAATACCTG > NC_002947/4551326‑4551621 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |