Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 58,435 | G→C | 11.9% | intergenic (‑346/+342) | PP_5424 ← / ← PP_0050 | hypothetical protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 58,435 | 0 | G | C | 11.9% | 113.6 / 8.0 | 42 | intergenic (‑346/+342) | PP_5424/PP_0050 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (19/18); new base C (3/2); total (22/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.96e-01 |
ACCTCCGTGAGGCCGGCCATCGTCATGCATCAGATCTTGATTGACACGCGTGCCGCTTTGGATAGCCTTGCAATTGAGGGCTGCAACTGCGCATTTGTCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTAGGAGCTAAAGGATCGCTGCGACTACTCCTCATCCCTTACCGAAAAGTCACGCGTCGGTCGTAAACGGCCCTTTCCAGGC > NC_002947/58289‑58581 | aCCTCCGTGAGGCCGGCCATCGTCATGCATCAGATCTTGATTGACACGCGTGCCGCTTTGGATAGCCTTGCAATTGAGGGCTGCAACTGCGCATTTGTCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGc < 2:9120/148‑1 (MQ=255) gccggccATCGTCATGCATCAGATCTTGATTGACACGCGTGCCGCTTTGGATAGCCTTGCAATTGAGGGCTGCAACTGCGCATTTGTCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAACCAGCTTCCTCTgc < 7:225421/149‑2 (MQ=255) cggccATCGTCATGCATCAGATCTTGATTGACACGCGTGCCGCTTTGGATAGCCTTGCAATTGAGGGCTGCAACTGCGCATTTGTCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAACCAGCTTCCTCTgctg < 2:212214/149‑4 (MQ=255) tGCATCAGATCTTGATTGACTCGCGGGCCGCTTTGGATAGCCTTGCTATTGAGGGCTGCAACTGCGCATTTGTCGGGCCTGGGTACGAGCATGAGCCCGCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGAcggcgg < 1:308088/149‑1 (MQ=255) gCATCAGATCTTGATTGACACGCGTGCCGCTTTGGATAGCCTTGCAATTGAGGGCTGCAACTGCGCATTTGTCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCggg > 4:178873/1‑149 (MQ=255) gCATCAGATCTTGATTGACACGCGTGCCGCTTTGGATAGCCTTGCAATTGAGGGCTGCAACTGCGCATTTGTCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCggg > 6:45325/1‑149 (MQ=255) gCATCAGATCTTGATTGACACGCGTGCCGCTTTGGATAGCCTTGCAATTGAGGGCTGCAACTGCGCATTTGTCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCggg > 6:289514/1‑149 (MQ=255) cATCAGATCTTGATTGACACGCGTGCCGCTTTGGATAGCCTTGCAATTGAGGGCTGCAACTGCGCATTTGTCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCggg > 5:204616/1‑148 (MQ=255) aTCAGATCTTGATTGACACGCGTGCCGCATTGCATAGCCTTGCAATTGAGGGCTGCAACTACGCATTTCTCGGGCCAGGGTACCAGCATGAGCACCCGCAATATTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGAcgtccgcca > 2:186277/1‑142 (MQ=255) aGATCTTGATTGACACGCGTGCCGCGTTGGATAGCCTTGCAATTGAGGTCTGCAACTGCGCATTTGTCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTg < 5:139524/149‑1 (MQ=255) ttgattgaCACGCGTGCCGCTTTGGATAGCCTTGCAATTGAGGGCTGCAACTGCGCATTTGTCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGt > 3:47840/1‑149 (MQ=255) ttgattgaCACGCGTGACGCTTTGGATAGCCTTGCAATTGAGGGCTGCAACTGCGCATTTGTCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGt > 2:14967/1‑149 (MQ=255) gattgaCACGCGTGCCGCTTTGGATAGCCTTGCAATTGAGGGCTGCAACTGCGCATTTGTCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTc < 1:41323/148‑1 (MQ=255) gattgaCACGCGTGCCGCTTTGGATAGCCTTGCAATTGAGGGCTGCAACTGCGCATTTGTCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTc < 3:178873/148‑1 (MQ=255) ccGCTTTGGATAGCCTTGCAATTGAGGGCTGCAACTGCGCATTTGTCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCaa < 4:47840/149‑1 (MQ=255) ccGCTTTGGATAGCCTTGCAATTGAGGGCTGCAACTACGCATTTGTCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGTGGGCATTGCCAGTCGGATTCTGAACCCaa < 1:186277/149‑1 (MQ=255) ccTTGCAATTGAGGGCTGCAACTGCGCATTTGTCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGAc > 3:129070/1‑147 (MQ=255) ccTTGCAATTGAGGGCTGCAACTGCGCATTTGTCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTa < 5:289514/149‑1 (MQ=255) ggCTGCAACTGCGCATTTGTCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTAGGAGCTAAAGGAt < 4:95891/149‑1 (MQ=255) aaCTGCGCATTTGTCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTAGGAGCTAAAGGATCGCTGc < 1:14967/149‑1 (MQ=255) tGCGCATTTGTCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTAGGAGCTAAAGGATCGCTGCGac > 8:34941/1‑149 (MQ=255) cATTTGTCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTAGGAGCTAAAGGATCGCTGCGactact > 8:162529/1‑149 (MQ=255) tCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGAc > 6:242173/1‑115 (MQ=255) tCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGAc < 5:242173/115‑1 (MQ=255) cGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGAGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTAGGAGCTAAAGGATCGCTGCGACTACTCCTCATc > 4:14441/1‑149 (MQ=255) cTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTAGGAGCTAAAGGATCGCTGCGACTACTCCTCATCCCTTa < 5:45325/149‑1 (MQ=255) aCCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTAGGAGCTAAAGGATCGCTGCGac < 2:75367/127‑1 (MQ=255) aCCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTAGGAGCTAAAGGATCGCTGCGac > 1:75367/1‑127 (MQ=255) gCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTAGGAGCTAAAGGATCGCTGCGACTACTCCTCATCCCTTACCGAAAAGt > 2:40764/1‑148 (MQ=255) aTGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTAGGAGCTAAAGGATCGCTGCGACTACTCCTCATCCCTTACCGAAAAGTCAc < 3:14441/149‑1 (MQ=255) tGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTAGGAGCTAAAGGATCGCTGCGACTACTCCTCATCCCTTACCGAAAAGTCAcg > 3:107235/1‑149 (MQ=255) gCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTAGGAGCTAAAGGATCGCTGCGACTACTCCTCATCCCTTACCGAAAAGTCAcgcg < 4:129070/148‑1 (MQ=255) ccGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTAGGAGCTAAAGGATCGCTGCGACTACTCCTCATCCCTTACCGAAAAGTCACGCgtcggt > 8:169507/1‑149 (MQ=255) ttttGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTAGGAGCTAAAGGATCGCTGCGACTACTCCTCATCCCTTACCGAAAAGTCACGCGTCGGTCGTaaa > 3:184655/1‑149 (MQ=255) tacttcagAGGAACCAGCTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTAGGAGCTAAAGGATCGCTGCGACTACTCCTCATCCCTTACCGAAAAGTCACGCGTCGGTCGTAAACGGc > 6:14233/6‑149 (MQ=255) ggCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTAGGAGCTAAAGGATCGCTGCGACTACTCCTCATCCCTTACCGAAAAGTCACGCGTCGGTCGTAAACgg < 4:184655/148‑1 (MQ=255) cagAGGAACCAGCTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTAGGAGCTAAAGGATCGCTGCGACTACTCCTCATCCCTTACCGAAAAGTCACGCGTCGGTCGTAAACGGCCCttt > 7:45849/1‑149 (MQ=255) gagGAACCAGCTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTAGGAGCTAAAGGATCGCTGCGACTACTCCTCATCCCTTACCGAAAAGTCACGCGTCGGTCGTAAACGGCCCTTTc > 7:178605/1‑148 (MQ=255) aGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAg < 2:226624/57‑1 (MQ=255) aGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAg > 1:226624/1‑57 (MQ=255) aGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTAGGAGCTAAAGGATCGCTGCGACTACTCCTCATCCCTTACCGAAAAGTCACGCGTCGGTCGTAAACGGCCCTTTCCAGGc > 2:141055/1‑148 (MQ=255) aGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTAGGAGCTAAAGGATCGCTGCGACTACTCCTCATCCCTTACCGAAAAGTCACGCGTCGGTCGTAAACGGCCCTTTCCAGGc < 1:141055/148‑1 (MQ=255) | ACCTCCGTGAGGCCGGCCATCGTCATGCATCAGATCTTGATTGACACGCGTGCCGCTTTGGATAGCCTTGCAATTGAGGGCTGCAACTGCGCATTTGTCGGGCCTGGGTACCAGCATGAGCCCCCGCAATTTTGGCAGCAGAGGAAGCTGGTTCCTCTGAAGTAGTGACGGCGGGCATTGCCAGTCGGATTCTGAACCCAAGGTCGCCAGACTAGGAGCTAAAGGATCGCTGCGACTACTCCTCATCCCTTACCGAAAAGTCACGCGTCGGTCGTAAACGGCCCTTTCCAGGC > NC_002947/58289‑58581 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |