Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,181,146 | A→T | 11.6% | L266H (CTC→CAC) | PP_4560 ← | ribonuclease BN |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,181,146 | 0 | A | T | 11.6% | 107.4 / 6.0 | 43 | L266H (CTC→CAC) | PP_4560 | ribonuclease BN |
Reads supporting (aligned to +/- strand): ref base A (19/19); new base T (3/2); total (22/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.41e-01 |
TATGAGGCTTGCTCGGGTTTGGGTGCTCGTGACCCAGTACAGTCAAGGTTTCCTTGGGCTTTTCCCCGTCGAAGTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTACATGGCGTTGTAGTCGGCAAAGGTCTTCACGTAGTAGGCAAAGCCCAGGGAGGCCACGATCCACACCACAACCGCCAG > NC_002947/5181006‑5181291 | tATGAGGCTTGCTCGGGTTTGGGTGCTCGTGACCCAGTACAGTCAAGGTTTCCTTGGGCTTTTCCCCGTCGAAGTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGagcagcag > 4:255190/1‑148 (MQ=255) tATGAGGCTTGCTCGGGTTTGGGTGCTCGTGACCCAGTACAGTCAAGGTTTCCTTGGGCTTTTCCCCGTCGAAGTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTCCTCGATCACCGCATTCATTTCGGC‑GCCTagcagcag > 7:72530/1‑148 (MQ=255) tCGGGTTTGGGTGCTCGTGACCCAGTACAGTCAAGGTTTCCTTGGGCTTTTCCCCGTCGAAGTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGa > 6:76383/1‑148 (MQ=255) ggTGCTCGTGACCCAGTACAGTCAAGGTTTCCTTGGGCTTTTCCCCGTCGAAGTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGaa < 5:139465/148‑1 (MQ=255) gTGCTCGTGACCCAGTACAGTCAAGGTTTCCTTGGGCTTTTCCCCGTCGAAGTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGaaa > 3:262805/1‑148 (MQ=255) gTGACCCAGTACAGTCAAGGTTTCCTTGGGCTTTTCCCCGTCGAAGTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATacagc > 4:148214/1‑148 (MQ=255) gACCCAGTACAGTCAAGGTTTCCTTGGGCTTTTCCCCGTCGAAGTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATacagcaac < 5:76383/149‑1 (MQ=255) cAGTACAGTCAAGGTTTCCTTGGGCTTTTCCCCGTCGAAGTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GACGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATacagcaacagca > 5:165728/1‑149 (MQ=255) tCAAGGTTTCCTTGGGCTTTTCCCCGTCGAAGTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGAtt > 5:86823/1‑149 (MQ=255) tCCTTGGGCTTTTCCCCGTCGAAGTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCaa < 6:165728/148‑1 (MQ=255) gggCTTTTCCCCGTCGAAGTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCAc < 8:235419/129‑1 (MQ=255) gggCTTTTCCCCGTCGAAGTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCAc > 7:235419/1‑129 (MQ=255) ttttCCCCGTCGAAGTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACga > 8:8660/1‑127 (MQ=255) ttttCCCCGTCGAAGTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACga < 7:8660/127‑1 (MQ=255) tttCCCCGTCGAAGTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTa > 5:212656/1‑148 (MQ=255) ttCCCCGTCGAAGTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTa < 4:262805/147‑1 (MQ=255) ccccGTCGAAGTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTACATg > 7:57231/1‑149 (MQ=255) cccGTCGAAGTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCg > 7:150022/1‑142 (MQ=255) cccGTCGAAGTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCg < 8:150022/142‑1 (MQ=255) tCGAAGTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTACATGGCGtt < 3:255190/149‑1 (MQ=255) taGTCTTTCTCGGGCGGGGTCTTGCGTTCGGCTGACTTGTGCTCGATCACCGCATTCATTTCGGC‑GCGGAGCAGCAGCA‑CGGCAGCGGTAATATAGAAATACAGCAACAGCACGATGAtt < 5:287811/119‑1 (MQ=255) aaGTCTTTCTCGCCCCGGATCTTGCCTTCGGCTGACATGTGCTCCATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATACAAAAACAGCCACAGCACGATGAtt > 6:287811/1‑120 (MQ=255) gTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTACATGGCGTTGTAGt < 7:45631/149‑1 (MQ=255) tCTTTCTCGCCCGGGTTCTTTCCTTCTGCTGACATGTGCTCGATCACCTCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTACATGGCGTTGTAGTc < 8:72530/149‑1 (MQ=255) ctcGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGaaa < 3:5540/83‑1 (MQ=255) ctcGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGaaa > 4:5540/1‑83 (MQ=255) ctcGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTACATGGCGTTGTAGTCGGCa < 6:86823/148‑1 (MQ=255) gCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTACATGGCGTTGTAGTCGGCAAAgg > 7:290447/1‑149 (MQ=255) gCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTACATGGCGTTGTAGTCGGCAAAg < 6:198266/148‑1 (MQ=255) gggTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTACATGGCGTTGTAGTCGGCAAAGGTCtt < 3:148214/149‑1 (MQ=255) ttCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTACATGGCGTTGTAGTCGGCAAAGGTCTTCAc < 6:212656/149‑1 (MQ=255) ccTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTACATGGCGTTGTAGTCGGCAAAGGTCTTCACgtagta < 3:71167/149‑1 (MQ=255) ttCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCATCGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCAc < 1:228338/99‑1 (MQ=255) ttCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCAc > 2:228338/1‑98 (MQ=255) ttCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTACATGGCGTTGTAGTCGGCAAAGGTCTTCACGTAGTAgg > 5:220522/1‑149 (MQ=255) ttCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGAAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTACATGGCGTTGTAGTCGGCAAAGGTCTTCACGTAGTAgg > 5:183728/1‑149 (MQ=255) gCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTACATGGCGTTGTAGTCGGCAAAGGTCTTCACGTAGTAGGCa > 2:105674/1‑147 (MQ=255) cTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTACATGGCGTTGTAGTCGGCAAAGGTCTTCACGTAGTAGGCAAAGCCCAGGGAgg < 8:57231/149‑1 (MQ=255) tatattTCGGCTGCCGTGCTGCTGCT‑CGGC‑GCCGAAATGTAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGCACATGGCGTTGTAGTCGGCAAAGGTCTTCACGTAGTAGGCAAAGCCCAGGGAGGCCACGATccacac > 3:97026/4‑149 (MQ=37) tattTCGGCTGCCGTGCTGCTGCT‑CGGC‑GCCGAAATGTAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGCTCATGGCGTTGTAGTCGGCAAAGGTCTTCACGTAGTAGGCAAAGCCCAGGGAGGCCACGATccacacc < 4:97026/147‑1 (MQ=37) tttCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTACATGGCGTTGTAGTCGGCAAAGGTCTTCACGTAGTAGGCAAAGCCCAGGGAGGCCACGATccacaccac > 8:298478/1‑148 (MQ=255) ggctgcCGTGCTGCTGCT‑CGGC‑GCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTACATGGCGTTGTAGTCGGCAAAGGTCTTCACGTAGTAGGCAAAGCCCAGGGAGGCCACGATCCACACCACAACCg > 5:145675/5‑149 (MQ=255) tgcCGTGCTGCTGCT‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTACATGGCGTTGTAGTCGGCAAAGGTCTTCACGTAGTAGGCAAAGCCCAgg > 2:135500/2‑122 (MQ=255) tgcCGTGCTGCTGCT‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTACATGGCGTTGTAGTCGGCAAAGGTCTTCACGTAGTAGGCAAAGCCCAgg < 1:135500/121‑1 (MQ=255) cGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTACATGGCGTTGTAGTCGGCAAAGGTCGTCACGTTGTAGGCAAAGCCCAGGGAGGCCCCGATCCACACCACACCCGCCAg > 8:219083/1‑148 (MQ=255) | TATGAGGCTTGCTCGGGTTTGGGTGCTCGTGACCCAGTACAGTCAAGGTTTCCTTGGGCTTTTCCCCGTCGAAGTCTTTCTCGCCCGGGTTCTTGCCTTCGGCTGACATGTGCTCGATCACCGCATTCATTTCGGC‑GCCGAGCAGCAGCA‑CGGCAGCCGAAATATAGAAATACAGCAACAGCACGATGATTGCACCAATGCTGCCGTACATGGCGTTGTAGTCGGCAAAGGTCTTCACGTAGTAGGCAAAGCCCAGGGAGGCCACGATCCACACCACAACCGCCAG > NC_002947/5181006‑5181291 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |