Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,346,040 A→G 6.9% M480V (ATG→GTG)  acsA‑II → acetyl‑CoA synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,346,0400AG 6.9% 169.2 / 2.6 58M480V (ATG→GTG) acsA‑IIacetyl‑CoA synthetase
Reads supporting (aligned to +/- strand):  ref base A (25/29);  new base G (2/2);  total (27/31)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.12e-01

GCTGCGCCACCCAGCCGATGTTCGGCGTGCAACCGGTGCTGCTGGACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGACTACTGGATCACCGGGCGCATCGACGATGTGATCAACGTGTCCGGGCACCGCATCGGCACCGCTGAA  >  NC_002947/5345894‑5346183
                                                                                                                                                    |                                                                                                                                               
gCTGCGCCACCCAGCCGATGTTCGGCGTGCAACCGGTGCTGCTGGACGAATAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATg                                                                                                                                               >  3:245209/1‑149 (MQ=255)
    cgcCACCCAGCCGATGTTCGGCGTGCAACCGGTGCTGCTGGACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTc                                                                                                                                            <  1:320916/148‑1 (MQ=255)
      ccACCCAGCCGATGTTCGGCGTGCAACCGGTGCTGCTGGACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCATCCGCTGGTGGTCgcc                                                                                                                                         <  1:243056/149‑3 (MQ=255)
      ccACCCAGCCGATGTTCGGCGTGCAACCGGTGCTGCTGGACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATAAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGa                                                                                                                                          >  8:254980/1‑148 (MQ=255)
        aCCCAGCCGATGTTCGGCGTGCAACCGGTGCTGCTGGACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGacac                                                                                                                                       >  2:191882/1‑149 (MQ=255)
           cAGCCGATGTTCGGCGTGCAACCGGTGCTGCTGGACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTa                                                                                                                                    >  1:279881/1‑149 (MQ=255)
           cAGCCGATGTTCGGCGTGCAACCGGTGCTGCTGGACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTa                                                                                                                                    >  6:5158/1‑149 (MQ=255)
               cGATGTTCGGCGTGCAACCGGTGCTGCTGGACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTc                                                                                                                                <  8:239884/149‑1 (MQ=255)
                  tGTTCGGCGTGCAACCGGTGCTGCTGGACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAg                                                                                                                             <  7:254980/149‑1 (MQ=255)
                   gTTCGGCGTGCAACCGGTGCTGCTGGACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCCACCAGCGGATGGTCGACACCTACTTCaa                                                                                                                              <  1:191882/148‑1 (MQ=255)
                   gTTCGGCGTGCAACCGGTGCTGCTGGACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTa                                                                                                                                    <  4:133799/141‑1 (MQ=255)
                   gTTCGGCGTGCAACCGGTGCTGCTGGACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTa                                                                                                                                    >  3:133799/1‑141 (MQ=255)
                    ttCGGCGTGCAACCGGTGCTGCTGGACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGcc                                                                                                                           >  8:76822/1‑149 (MQ=255)
                    ttCGGCGTGCAACCGGTGCTGCTGGACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGc                                                                                                                            <  8:118404/148‑1 (MQ=255)
                              aaCCGGTGCTGCTGGACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGc                                                                                                                 <  6:222159/149‑1 (MQ=255)
                                 cGGTGCTGCTGGACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGctac                                                                                                              <  1:206977/149‑1 (MQ=255)
                                     gctgctGGACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTactact                                                                                                          >  7:101393/1‑149 (MQ=255)
                                         ctgGACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTc                                                                                                        <  5:5158/147‑1 (MQ=255)
                                           ggACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTc                                                                                                                                            <  1:236745/109‑1 (MQ=255)
                                           ggACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTc                                                                                                                                            >  2:236745/1‑109 (MQ=255)
                                            gACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGTCCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCAc                                                                                                      <  1:88645/147‑1 (MQ=255)
                                            gACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTg                                                                                                    <  7:76822/148‑1 (MQ=255)
                                               gAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGa                                                                                                >  6:12616/1‑149 (MQ=255)
                                                aaaaaGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGccc                                                                                                                          <  7:240353/122‑1 (MQ=255)
                                                aaaaaGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGccc                                                                                                                          >  8:240353/1‑122 (MQ=255)
                                                 aaaaGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACg                                                                                              >  8:233167/1‑149 (MQ=255)
                                                   aaGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGt                                                                                            <  4:277021/149‑1 (MQ=255)
                                                            tGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTcgc                                                                                   >  1:86671/1‑149 (MQ=255)
                                                            tGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTcgc                                                                                   >  7:41358/1‑149 (MQ=255)
                                                               tCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACtt                                                                                                         >  5:257504/1‑124 (MQ=255)
                                                               tCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACtt                                                                                                         <  6:257504/124‑1 (MQ=255)
                                                                 gAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGc                                                                              >  2:303227/1‑149 (MQ=255)
                                                                  aaGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGcc                                                                             >  3:151803/1‑149 (MQ=255)
                                                                     gCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGTTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGAc                                                                          <  6:206521/149‑1 (MQ=255)
                                                                      ccccGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCACTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGACGTCg                                                                         >  8:232190/1‑149 (MQ=255)
                                                                       cccGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCTGTCGCGATGCCGACgg                                                                        >  8:163403/1‑149 (MQ=255)
                                                                               cggcgTGCTGGCGATCAAACCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGactact                                                                <  7:267253/149‑1 (MQ=255)
                                                                                 gcgTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGACTACTgg                                                              <  7:65625/149‑1 (MQ=255)
                                                                                         gCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGACTACTGGATCAcc                                                        <  2:42015/147‑1 (MQ=255)
                                                                                         gCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGACTACTGGATCACCgg                                                      >  8:23773/1‑149 (MQ=255)
                                                                                          cGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGACTACTGGATCACCggg                                                     <  8:101393/149‑1 (MQ=255)
                                                                                           gATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGacta                                                                  <  2:245789/135‑1 (MQ=255)
                                                                                           gATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGAATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGacta                                                                  >  1:245789/1‑135 (MQ=255)
                                                                                                 aGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGACTACTGGATCACCGGGCGCATcg                                              <  4:151803/149‑1 (MQ=255)
                                                                                                  gCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGACTACTGGATCACCGGGCGCATcga                                             <  7:23773/149‑1 (MQ=255)
                                                                                                       cTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGACTACTGGATCACCGGGCGCATCGACGAtg                                        <  2:86671/149‑1 (MQ=255)
                                                                                                          gCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGACTACTGGATCACCGGGCGCATCGACGATGTGa                                     <  2:279881/149‑1 (MQ=255)
                                                                                                              gggCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGACTACTGGATCACCGGGCGCATCGACGATGTGa                                     <  7:34969/145‑1 (MQ=255)
                                                                                                              gggCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGACTACTGGATCACCGGGCGCATCGACGATGTGa                                     >  8:34969/1‑145 (MQ=255)
                                                                                                                  aGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGACTACTGGATCACCGGGCGCATCGACGATGTGATCAACgtg                             >  7:68843/1‑149 (MQ=255)
                                                                                                                        gCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGACTACTGGATCACCGGGCGCATCGACGATGTGATCAACgt                              <  5:217909/142‑1 (MQ=255)
                                                                                                                        gCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGACTACTGGATCACCGGGCGCATCGACGATGTGATCAACgt                              >  6:217909/1‑142 (MQ=255)
                                                                                                                                    gtcGACCATCCGCTGGTGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGACTACTGGATCACCGGGCGCATCGACGATGTGATCAACGTGTCCGGGCACCGCATCgg            >  4:212742/3‑149 (MQ=255)
                                                                                                                                     tcGACCATCCGCTGGTGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGACTACTGGATCACCGGGCGCATCGACGATGTGATCAACGTGTCCGGGCAcc                   <  8:120669/140‑1 (MQ=255)
                                                                                                                                     tcGACCATCCGCTGGTGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGACTACTGGATCACCGGGCGCATCGACGATGTGATCAACGTGTCCGGGCAcc                   >  7:120669/2‑141 (MQ=255)
                                                                                                                                           caccaGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGACTACTGGATCACCGGGCGCATCGACGATGTGATCAACGTGTCCGGGCACCGCATCGGCACCGc      >  2:36922/1‑149 (MQ=255)
                                                                                                                                           caccaGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGACTACTGGATCACCGGGCGCATCGACGATGTGATCAACGTGTCCGGGCACCGCATCGGCACCGc      <  8:68843/149‑1 (MQ=255)
                                                                                                                                               aGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGACTACTGGATCACCGGGCGCATCGACGATGTGATCAACGTGTCCGGGCACCGCATCGGCACCGCTGaa  <  5:92516/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                               
GCTGCGCCACCCAGCCGATGTTCGGCGTGCAACCGGTGCTGCTGGACGAAAAAGGCAAACTGATCGAAGGCCCCGGCGCCGGCGTGCTGGCGATCAAAGCCAGCTGGCCCGGGCAGATCCGCAGCGTCTACGGCGACCACCAGCGGATGGTCGACACCTACTTCAAGCCCCTGCCCGGCTACTACTTCACTGGCGACGGTGCCCGTCGCGATGCCGACGGCGACTACTGGATCACCGGGCGCATCGACGATGTGATCAACGTGTCCGGGCACCGCATCGGCACCGCTGAA  >  NC_002947/5345894‑5346183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: