Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,427,915 | A→T | 10.3% | L63Q (CTG→CAG) | rhlE‑I ← | ATP‑dependent RNA helicase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,427,915 | 0 | A | T | 10.3% | 149.3 / 7.3 | 58 | L63Q (CTG→CAG) | rhlE‑I | ATP‑dependent RNA helicase |
Reads supporting (aligned to +/- strand): ref base A (25/27); new base T (3/3); total (28/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.07e-01 |
CCCGCCATACACCGCGTAAGTAGTCAGCGGCAGGTTCTCGGCGTATTCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATGGCTTTGGCCTGCACCGGGGTCGGGGTGGTGTAGTCCAGTTGCTGCAGCGTG > NC_002947/5427770‑5428061 | cccGCCATACACCGCGTAAGTAGTCAGCGGCAGGTTCTCGGCGTATTCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGgc > 8:101888/1‑149 (MQ=255) cccGCCATACACCGCGTAAGTAGTCAGCGGCAGGTTCTCGGCGTATTCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGgc > 3:82389/1‑149 (MQ=255) cccGCCATACACAGCGTAAGTAGTCAGTGGCAGGTTCTCGGCGTATTCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGgc > 4:169162/1‑149 (MQ=255) aTACACCGCGTAAGTAGTCAGCGGCAGGTTCTCGGCGTATTCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTg > 3:7688/1‑147 (MQ=255) ccGCGTAAGTAGTCAGCGGCAGGTTCTCGGCGTATTCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTGCAGCGCCTGGCGCTggagggcg < 6:165331/149‑5 (MQ=255) cgcgTAAGTAGTCAGCGGCAGGTTCTCGGCGTATTCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCAcag > 6:202353/1‑149 (MQ=255) cgTAAGTAGTCAGCGGCAGGTTCTCGGCGTATTCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCAcaggc < 7:99851/149‑1 (MQ=255) cgTAAGTAGGCAGCGGCAGGTTCTCGGCGTATTCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCAcaggc < 3:251639/149‑1 (MQ=255) agtagtCAGCGGCAGGTTCTCGGCGTAGTCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGCCGCTGCAGCAcaggcagg < 2:273616/148‑1 (MQ=255) gCGGCAGGTTCTCGGCGTATTCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCt < 4:215360/149‑1 (MQ=255) gCGGCAGGTTCTCGGCGTATTCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCt > 2:151290/1‑149 (MQ=255) gCAGGTTCTCGGCGTATTCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTgcagca > 5:205428/1‑129 (MQ=255) gCAGGTTCTCGGCGTATTCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTgcagca < 6:205428/129‑1 (MQ=255) tctcGGCGTATTCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTg > 1:198048/1‑149 (MQ=255) ctcGGCGTATTCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGGTCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCtt > 1:42576/1‑147 (MQ=255) ctcGGCGTATTCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCtt < 2:42576/147‑1 (MQ=255) cGGCGTATTCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCg > 2:143860/1‑149 (MQ=255) ggCGTATTCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGcc < 6:165317/147‑1 (MQ=255) ggCGTATTCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGc < 4:82389/146‑1 (MQ=255) cGTATTCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTa > 5:106574/1‑149 (MQ=255) ttCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCg < 2:294836/148‑1 (MQ=255) gcACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTgg > 8:260498/1‑149 (MQ=255) acgaagttgtCCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGc > 4:303457/6‑149 (MQ=255) ttgtGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCgg < 3:245989/148‑1 (MQ=255) tgCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCAt < 1:143860/149‑1 (MQ=255) tgCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCAt < 2:198048/149‑1 (MQ=255) cACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATc < 3:169162/148‑1 (MQ=255) aCCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCg < 2:279735/129‑1 (MQ=255) aCCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCg > 1:279735/1‑129 (MQ=255) cGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGcgg > 5:150033/1‑149 (MQ=255) ggCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTcgcg < 7:101888/147‑1 (MQ=255) cAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTgg > 4:158445/1‑124 (MQ=255) cAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTgg < 3:158445/124‑1 (MQ=255) cAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGcggccgg > 5:241119/1‑149 (MQ=255) gCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCggccggcc < 4:7688/149‑1 (MQ=255) gCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATGGCt < 3:303457/149‑1 (MQ=255) ccAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATGGCTTTg < 5:202353/149‑1 (MQ=255) cAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATGGCTTTgg < 1:151290/149‑1 (MQ=255) aaGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATGGCTTTGGc > 3:309749/1‑149 (MQ=255) gATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATGGCTTTGGCCTGCACcg > 1:162201/1‑149 (MQ=255) tCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATGGCTTTGGCCTGCACcggg < 5:114118/149‑1 (MQ=255) gTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATGGCTTTGGCCTGCACcggggtcg < 7:260498/149‑1 (MQ=255) cACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCggccggcc > 8:94309/1‑103 (MQ=255) cACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCggccggcc < 7:94309/103‑1 (MQ=255) cACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATGGCTTTg < 5:11026/124‑1 (MQ=255) cACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATGGCTTTg > 6:11026/1‑124 (MQ=255) cACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATGGCTTTGGCCTGCACCGGGGTCGGGgtggtg > 1:247104/1‑148 (MQ=255) cACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATGGCTTTGGCCTGCACAGGGGTCGGGgtggtg > 4:270246/1‑148 (MQ=255) tgtgctgcAGCGCCTGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGATACTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATGGCTTTGGCCTGCACCGGGGTCGGGGTGGTGTAGTCCAg > 1:257583/8‑149 (MQ=255) gtgctgcAGCGCCTGGCGCTGGAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATGGCTTTGGCCTGCACCGGGGTCGGGGTGGTGTAGTCCAGtt > 2:293281/7‑149 (MQ=255) tgcAGCGCCTGGCGCTGGAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATgg > 7:92172/3‑106 (MQ=255) tgcAGCGCCTGGCGCTGGAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATgg < 8:92172/104‑1 (MQ=255) tCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATGGCTTTGGCCTGCACCGGGGTCGGGGTGGTGTAGTCCAGTtgctg > 8:243783/1‑149 (MQ=255) gcgcCTGGCGCTGGAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATGGCTTTGGCCTGCACCGGGGTCGGGGTGGTGTAGTCCAGTTGCTGCAGc < 1:293281/149‑1 (MQ=255) gcCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATGGCTTTGGCCTGCACCGGGGTCGGGGTGGTGTAGTCCAGTTGCTGCAGCGt < 7:243783/149‑1 (MQ=255) ccAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATGGCTTTGGCCTGCACCGGGGTCGGGGTGGTGTAGTCCAGTTGCTGCAGCGTg < 6:106574/149‑1 (MQ=255) cAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATGGCTTTGGCCTGCACCGGGGTCGGggtggt < 2:239475/126‑1 (MQ=255) cAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATGGCTTTGGCCTGCACCGGGGTCGGggtggt > 1:239475/1‑126 (MQ=255) | CCCGCCATACACCGCGTAAGTAGTCAGCGGCAGGTTCTCGGCGTATTCGCGCACGTTGTTGTGCACCTGCTCGGCCAGCTCGCGAGTGGGTACCAGCACCAAGGCGCGGATCGAGTTGCTGGCCACCTTCTCGCCCTCCAGCGCCAGGCGCTGCAGCACAGGCAGGGCAAAGCCTGCGGTCTTGCCGGTACCGGT‑CTGGGCTGCGGCCATCAGGTCGCGGCCGGCCAGCACGGCGGGGATGGCTTTGGCCTGCACCGGGGTCGGGGTGGTGTAGTCCAGTTGCTGCAGCGTG > NC_002947/5427770‑5428061 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |