Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,518,553 | A→T | 7.0% | C10S (TGC→AGC) | PP_4850 ← | membrane protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,518,553 | 0 | A | T | 7.0% | 169.3 / 2.9 | 57 | C10S (TGC→AGC) | PP_4850 | membrane protein |
Reads supporting (aligned to +/- strand): ref base A (27/26); new base T (2/2); total (29/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.36e-01 |
AACACCAGCAGACCGGCCAGCAGGCTGGGCAGCAACTTCAGGGGCAAAGCCAGCAGCAGCCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCTTCAGGGCTTTGGTGGTGGCGTCAGCATTGCAGGTCTTCATTTTTTCTTGCTGGGTTTGG > NC_002947/5518405‑5518698 | aaCACCAGCAGACCGGCCAGCAGGCTGGGCAGCAACTTCAGGGGCAAAGCCAGCAGCAGCCCGGCCATGACGATGATCAGGCTGGCCAGGGTGTTCTGACGGGGGGTAAAGGTCATAAAGCCTCGACGGCAGACAGCGGGAATGCCGCa < 3:202798/149‑1 (MQ=255) cagcagACCGGCCAGCAGGCTGGGCAGCAACTTCAGGGGCAAAGCCAGCAGCAGCCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTg > 3:33072/1‑149 (MQ=255) gcagACCGGCCAGCAGGCTGGGCAGCAACTTCAGGGGCAAAGCCAGCAGCAGCCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGc > 8:136243/1‑148 (MQ=255) gcagACCGGCCAGCAGGCTGGGCAGCAACTTCAGGGGCAAAGCCAGCAGCAGCCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGc > 1:8258/1‑148 (MQ=255) gcagACCGGCCAGCAGGCTGGGCAGCAACTTCAGGGGCAAAGCCAGCAGCAGCCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGc > 6:278219/1‑148 (MQ=255) cGGCCAGCAGGCTGGGCAGCAACTTCAGGGGCAAAGCCAGCAGCAGCCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACTGCGGCATTCCCGCTGTCTGc > 8:282623/1‑142 (MQ=255) cGGCCAGCAGGCTGGGCAGCAACTTCAGGGGCAAAGCCAGCAGCAGCCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACTGCGGCATTCCCGCTGTCTGc < 7:282623/142‑1 (MQ=255) cGGCCAGCAGGCTGGGCAGCAACTTCAGGGGCAAAGCCAGCAGCAGCCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCtt > 4:69333/1‑149 (MQ=255) cGGCCAGCAGGCTGGGCAGCAACTTCAGGGGCAAAGCCAGCAGCAGCCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCtt > 4:48609/1‑149 (MQ=255) gCCAGCAGGCTGGGCAGCAACTTCAGGGGCAAAGCCAGCAGCAGCCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTgg > 2:203503/1‑149 (MQ=255) ccAGCAGGCTGGGCAGCAACTTCAGGGGCAAAGCCAGCAGCAGCCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTggc < 2:287069/149‑1 (MQ=255) ccAGCAGGCTGGGCAGCAACTTCAGGGGCAAAGCCAGCAGCAGCCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTggc < 2:8258/149‑1 (MQ=255) gcagcaACTTCAGGGGCAAAGCCAGCAGCAGCCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCa > 1:231574/1‑147 (MQ=255) cagcaACTTCAGGGGCAAAGCCAGCAGCAGCCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAg < 1:203503/149‑1 (MQ=255) cagcaACTTCAGGGGCAAAGCCAGCAGCAGCCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAg < 4:174819/149‑1 (MQ=255) agcaACTTCAGGGGCAAAGCCAGCAGCAGCCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAgg < 3:48609/149‑1 (MQ=255) ccAGCAGCAGCCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATttcttctt > 7:183578/1‑148 (MQ=255) cagcagcagCCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCa < 5:88078/149‑1 (MQ=255) cagcagcagCCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCa < 3:69333/149‑1 (MQ=255) agcagcagcCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAg > 5:219515/1‑149 (MQ=255) agcagcagcCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAg < 2:231574/149‑1 (MQ=255) gcatgccGGCCATGACGATGATCAGGCTGGCCAGTGTGATCTGACGGGGGGTAAAGTTCATACAGCCTCGTCGGCAGACAGCGGGAATGCCGCAGTCTGcc < 4:38901/96‑1 (MQ=255) gcagcCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGcc > 3:38901/1‑101 (MQ=255) gcCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGgcgc < 1:123741/112‑1 (MQ=255) gcCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGgcgc > 2:123741/1‑112 (MQ=255) cccGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAgg > 6:200135/1‑142 (MQ=255) cccGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAgg < 5:200135/142‑1 (MQ=255) cGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGCTGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTc < 5:278219/149‑1 (MQ=255) atgatCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCtt < 8:183578/149‑1 (MQ=255) tgatCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTg > 6:102706/1‑149 (MQ=255) atCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTgcg < 5:102706/149‑1 (MQ=255) tCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTgcgc < 7:136243/149‑1 (MQ=255) cAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCCACGGCAGACAGCGGGAATGCCGCAGTCTCCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTAATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCt > 6:310674/1‑149 (MQ=255) gACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCTTCAGGGCTTtg > 2:233649/1‑149 (MQ=255) actggggggAAAGGGCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCTTCAGGGCtt < 8:220045/143‑1 (MQ=255) aCGGGGGGTAAAGGTCATACAGGCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGATGGCCTTGCGCTCATCCCCCTTCAGGGCTTtg < 1:316441/148‑1 (MQ=255) aCGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTgc > 6:301185/1‑125 (MQ=255) ggggggTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCTTCAGGGCTTtggtg > 3:246829/1‑149 (MQ=255) aaGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCTTCAGGGCTTTGGTGGTGGCGt < 4:33072/148‑1 (MQ=255) aTACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATttc > 3:294919/1‑78 (MQ=255) aTACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATttc < 4:294919/78‑1 (MQ=255) aCAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCTTCAGGGCTTTGGTGGTGGCGTCAGCATTg > 3:191846/1‑148 (MQ=255) cAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCTTCAGGGCTTTGGTGGTGGCGTCAGCATTg > 7:132633/1‑147 (MQ=255) ccTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCTTCAGGGCTTTGGTGGTGGCGTCAGCATTGCAGGt < 6:219515/149‑1 (MQ=255) tCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCTTCAGGGCTTTGGTGGTGGCGTCAGCATTGCAGGTCt > 8:22214/1‑149 (MQ=255) gACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCTTCAGGGCTTTGGTGGTGGCGTCAGCATTGCAGGTCtt < 7:36774/148‑1 (MQ=255) cAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCTTCAGGGCTTTGGTGGTGGCGTCAGCATTGCAGGTCTTCAtttt < 4:191846/149‑1 (MQ=255) aGACTGCGGCATTCCCGCTGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCTTCAGGGCTTTGGTGGTGGc < 3:164053/124‑1 (MQ=255) aGACTGCGGCATTCCCGCTGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCTTCAGGGCTTTGGTGGTGGc > 4:164053/1‑124 (MQ=255) aGACAGCGGGAATGCAGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGAGAAGGTCATTTCTTCTTCAGGAAATCGCTCATGAAGGCCATGCGCTCATCCCCCTTCAGGGCTTTGGTGGTGGCGTCAGCATTGCATGTCTTCattatt > 4:150423/1‑149 (MQ=255) gCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCTTCAGGGCTTTGGTGGTGGCGTCAGCATTGCAGGTCTTCATTTTTTCTTg < 7:22214/149‑1 (MQ=255) gAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCTTCAGGGCTTTGGTGGTGGCGTCAGCATTGCAGGTCTTCATTTTTTCTTGCTgg > 5:303024/1‑149 (MQ=255) gAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCTTCAGGGCTTTGGTGGTGGCGTCAGCATTGCAGGTCTTCATTTTTTCTTGCTgg > 5:273385/1‑149 (MQ=255) gAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCTTCAGGGCTTTGGTGGTGGCGTCAGCATTGCAGGTCTTCATTTTTTCTTGCTgg < 4:246829/149‑1 (MQ=255) gCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCTTCAGGGCTTTGGTGGTGGCGTCAGCATTGCAGGTCTTCATTTTTTCTTGCTGGGttt > 5:182364/1‑149 (MQ=255) gCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCTTAAGGGCTTTGGTGGTGGCGTCAGCATTGCAGGTCTTCATTTTTTCTTGCTGGGttt > 4:104641/1‑149 (MQ=255) cGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCTTCAGGGCTTTGGTGGTGGCGTCAGCATTGCAGGTCTTCATTTTTTCTTGCTGGGTTTgg < 1:233649/149‑1 (MQ=255) cGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCTTCAGGGCTTTGGTGGTGGCGTCAGCATTGCAGGTCTTCATTTTTTCTTGCTGGGTTTgg < 3:104641/149‑1 (MQ=255) | AACACCAGCAGACCGGCCAGCAGGCTGGGCAGCAACTTCAGGGGCAAAGCCAGCAGCAGCCCGGCCATGACGATGATCAGGCTGGCCAGGGTGATCTGACGGGGGGTAAAGGTCATACAGCCTCGACGGCAGACAGCGGGAATGCCGCAGTCTGCCAGCCTTGGCGGCGCAGGCATAGGCGCAGGTCATTTCTTCTTCAGGCAATCGCTCATGAAGGCCTTGCGCTCATCCCCCTTCAGGGCTTTGGTGGTGGCGTCAGCATTGCAGGTCTTCATTTTTTCTTGCTGGGTTTGG > NC_002947/5518405‑5518698 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |