Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,638,103 | G→A | 6.8% | A213T (GCG→ACG) | PP_4949 → | TldD/PmbA family peptidase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,638,103 | 0 | G | A | 6.8% | 175.4 / 2.2 | 59 | A213T (GCG→ACG) | PP_4949 | TldD/PmbA family peptidase |
Reads supporting (aligned to +/- strand): ref base G (22/33); new base A (2/2); total (24/35) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.03e-01 |
CGAACTGCGCCATGCCCAGCGCTTCCTGTTCCCGGGCCTGGGGGTGACCGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACCTGCTGTTGATGCCGGACCAGATGATGCTGCAGATTCACGAATCCATCGGCCACCCGCTGGAGATGGAC > NC_002947/5637955‑5638243 | cGAACTGCGCCATGCCCAGCGCTTCCTGTTCCCGGGCCTGGGGGTGACCGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGgcg > 5:305103/1‑149 (MQ=255) actgatccATGCCCAGCTCTTCCTGTTCCCGGGCCTGGGGGTGACCGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCgg < 6:224214/143‑1 (MQ=255) cTGCGCCATGCCCAGCGCTTCCTGTTCCCGGGCCTGGGGGTGACCGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGc > 5:82104/1‑149 (MQ=255) aTGCCCAGCGCTTCCTGTTCCCGGGCCTGGGGGTGACCGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCgg < 6:82104/149‑1 (MQ=255) tGCCCAGCGCTTCCTGTTCCCGGGCCTGGGGGTGACCGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCggg < 8:14347/149‑1 (MQ=255) cccAGCGCTTCCTGTTCCCGGGCCTGGGGGTGACCGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGt < 8:242928/148‑1 (MQ=255) cccAGCGCTTCCTGTTCCCGGGCCTGGGGGTGACCGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTg < 2:278299/149‑1 (MQ=255) ccAGCGCTTCCTGTTCCCGGGCCTGGGGGTGACCGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCACGGCCAGCCGGGTgg > 5:2502/1‑149 (MQ=255) ccAGCGCTTCCTGTTCCCGGGCCTGGGGGTGACCGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCACGGCCAGCCGGGTgg > 5:38480/1‑149 (MQ=255) cAGCGCTTCCTGTTCCCGGGCCTGGGGGTGACCGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGc < 2:44438/149‑1 (MQ=255) cTGTTCCCGGGCCTGGGGGTGACCGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGc > 7:263276/1‑149 (MQ=255) tCCCGGGCCTGGGGGTGACCGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTg > 6:328145/1‑149 (MQ=255) ccTGGGGGTGACCGCCAGCGCCGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAActgc < 8:263276/149‑1 (MQ=255) cTGGGGGTGACCGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAActgct > 6:97862/1‑149 (MQ=255) ggggTGACCGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAActgctgct < 5:241357/149‑1 (MQ=255) gTGACCGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTgg > 7:105583/1‑148 (MQ=255) gACCGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGc < 1:108517/108‑1 (MQ=255) gACCGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGAGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGc > 2:108517/1‑108 (MQ=255) aCCGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCAcc > 3:303153/1‑149 (MQ=255) ccGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCAcc > 1:175780/1‑148 (MQ=255) ccGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCg < 8:105583/149‑1 (MQ=255) cGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCg > 3:113603/1‑148 (MQ=255) cGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCg > 5:184400/1‑148 (MQ=255) ccAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCACGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAac < 6:2502/149‑1 (MQ=255) ccAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCACGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAac < 6:38480/149‑1 (MQ=255) ccAGCGACGGCCAGGACAGCCAAAGCCGCAGACTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGaa > 2:105996/1‑148 (MQ=255) aGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAacac < 6:291557/149‑1 (MQ=255) cGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACAccc > 6:313253/1‑149 (MQ=255) gACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGTGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACAcccc < 2:247383/149‑1 (MQ=255) gACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACAcccc < 6:184400/149‑1 (MQ=255) gACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACAcccc < 6:188235/149‑1 (MQ=255) ccAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTg < 5:202980/149‑1 (MQ=255) gACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGctg > 1:276432/1‑147 (MQ=255) ccAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCcgcgc > 4:73115/1‑148 (MQ=255) aaGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGAcc < 5:97862/149‑1 (MQ=255) gCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGAGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACctgctg > 4:78030/1‑149 (MQ=255) aGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACCTGCTGtt < 2:276432/149‑1 (MQ=255) gcgACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCcg > 7:179074/1‑125 (MQ=255) gcgACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCcg < 8:179074/125‑1 (MQ=255) gcgACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACCTGCTGTTGATGCCGGAc < 6:305103/149‑1 (MQ=255) cAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACCTGCTGTTGATGCCGGACCAga < 5:313253/149‑1 (MQ=255) aaCTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACCTGCTGTTGATGCCGGACCAgat > 7:136919/1‑149 (MQ=255) ccAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACCTGCTGTTGATGCCGGACCAg > 6:307755/1‑139 (MQ=255) ccAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACCTGCTGTTGATGCCGGACCAg < 5:307755/139‑1 (MQ=255) ccAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACCTGCTGTTGATGCCGGACCAGATGAtgctgc < 5:328145/149‑1 (MQ=255) aCAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACCTGCTGTTGATGCCGGACCAGATGATGCTGCAGa < 8:136919/149‑1 (MQ=255) gtggtTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACCTGCTGTTGATGCCGGACCAGATGATGCTGCAGATTCAc < 4:303153/149‑1 (MQ=255) gtTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACCTGCTGTTGATGCCGGACCAga > 3:268752/1‑129 (MQ=255) gtTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACCTGCTGTTGATGCCGGACCAga < 4:268752/129‑1 (MQ=255) gtTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACCTGCTGTTGATGCCGGACCAGATGATGCTGCAGATTCACGaa < 8:92231/149‑1 (MQ=255) ttCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACCTGCTGTTGATGCCGGACCAGATGATGCTGCAGATTCACGAAt > 6:38917/1‑148 (MQ=255) ttCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACCTGCTGTTGATGCCGGACCAGATGATGCTGCAGATTCACGAAt < 5:38917/148‑1 (MQ=255) catcGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACCTGCTGTTGATGCCGGACCAGATGATGCTGCAGATTCACGAATCCATCGGcc > 7:132856/1‑149 (MQ=255) tcGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGt < 2:202999/83‑1 (MQ=255) tcGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGt > 1:202999/1‑83 (MQ=255) gcgcTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACCTGCTGTTGATGCCGGACCAGATGATGCTGCAGATTCACGAATCCATCGGCCACCCGc < 2:175780/149‑1 (MQ=255) cgcTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACCTGCTGTTGATGCCGGACCAGATGATGCTTCAGATTCACGAATCCATCGGCCACCCGCt < 8:119127/149‑1 (MQ=255) gcTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACCTGCTGTTGATGCCGGACCAGATGATGCTGCAGATTCACGAATCCATCGGCCACCCGCTg < 3:73115/149‑1 (MQ=255) gCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACCTGCTGTTGATGCCGGACCAGATGATGCTGCAGATTCACGAATCCATCGGCCACCCGCTGGAGATg < 4:113603/149‑1 (MQ=255) gTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACCTGCTGTTGATGCCGGACCAGATGATGCTGCAGATTCACGAATCCATCGGCCACCCGCTGGAGATGGAc < 3:78030/147‑1 (MQ=255) | CGAACTGCGCCATGCCCAGCGCTTCCTGTTCCCGGGCCTGGGGGTGACCGCCAGCGACGGCCAGGACAGCCAAAGCCGCAGCCTGGGCCGCGACAACTTCGGCCAACAGGGTGGTTTCGAGATCATCGAGCGCTGCGGCCTGGTCGGCGCGGCCAGCCGGGTGGCCGAAGAAGCACTGCAACTGCTGCTGGCACCGAACACCCCCAGTGGCCCGCGCGACCTGCTGTTGATGCCGGACCAGATGATGCTGCAGATTCACGAATCCATCGGCCACCCGCTGGAGATGGAC > NC_002947/5637955‑5638243 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |