Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,670,463 | T→C | 7.7% | intergenic (+52/‑33) | metF → / → PP_4978 | 5,10‑methylenetetrahydrofolate reductase/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,670,463 | 0 | T | C | 7.7% | 147.5 / 3.1 | 52 | intergenic (+52/‑33) | metF/PP_4978 | 5,10‑methylenetetrahydrofolate reductase/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (22/26); new base C (2/2); total (24/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.50e-01 |
TTGCAAGGCGGCGCGCCAGGCCTGCACTTCTATACCTTGAACCAGGCTGAACCGAGCCTGGCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTGGCCCGGCAACCTACCATCAGGAAGCCTGCTTCAGCATCGTCAGCGCCCTCGCCCAGC > NC_002947/5670319‑5670610 | ttGCAAGGCGGCGCGCCAGGCCTGCACTTCTATACCTTGAACCAGGCTGAACCGAGCCTGGCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAg > 1:14657/1‑149 (MQ=255) gCAAGGCGGCGCGCCAGGCCTGCACTTCTATACCTTGAACCAGGCTGAACCGAGCCTGGCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCCTTGGTCATAGACTAAAGcc > 4:98722/1‑149 (MQ=255) cAAGGCGGCGCGCCAGGCCTGCACTTCTATACCTTGAACCAGGCTGAACCGAGCCTGGCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGcc < 2:14657/148‑1 (MQ=255) cAAGGCGGCGCGCCAGGCCTGCACTTCTATACCTTGAACCAGGCTGAACCGAGCCTGGCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGAATAAGGCTTTAGTCTATGACCAAAGcc < 6:107725/148‑1 (MQ=255) aaGGCGGCGCGCCAGGCCTGCACTTCTATACCTTGAACCAGGCTGAACCGAGCCTGGCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCt > 1:199773/1‑148 (MQ=255) gcggcgCGCCAGGCCTGCACTTCTATACCTTGAACCAGGCTGAACCGAGCCTGGCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTAtt < 5:305660/149‑1 (MQ=255) ggagcgcCAGGCCTGCACTTCTATACCTTGAACCAGGCTGAACCGAGACTGTCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCa < 4:201387/146‑1 (MQ=255) cgcCAGGCCTGCACTTCTATACCTTGAACCAGGCTGAACCGAGCCTGGCGAGCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCAtttt < 2:222260/149‑1 (MQ=255) gcCAGGCCTGCACTTCTATACCTTGAACCAGGCTGAACCGAGCCTGGCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTc > 5:12593/1‑149 (MQ=255) cAGGCCTGCACTTCTATACCTTGAACCAGGCTGAACCGAGCCTGGCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTGAAGCCTTATTCATTTTCgg < 8:210279/149‑1 (MQ=255) cAGGCCTGCACTTCTATACCTTGAACCAGGCTGAACCGAGCCTGGCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCgg < 4:26941/149‑1 (MQ=255) aGGCCTGCACTTCTATACCTTGAACCAGGCTGAACCGAGCCTGGCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCCTTGGTCATAGACTAAAGCCTTATTCATTTTCggg < 3:98722/149‑1 (MQ=255) gCCTGCACTTCTATACCTTGAACCAGGCTGAACCGAGCCTGGCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGtt < 4:275394/149‑1 (MQ=255) cTATACCTTGAACCAGGCTGAACCGAGCCTGGCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCt > 8:65085/1‑149 (MQ=255) tataCCTTGAACCAGGCTGAACCGAGCCTGGCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCtt < 3:252568/149‑1 (MQ=255) ataCCTTCAACCAGGCTGAACCGAGCCTGGCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGATTTGGTCATAGACTAAAGCCTTATTCATTTTCTGGTTAAACAGTTCTtg > 4:69219/1‑149 (MQ=255) cTTGAACCAGGCTGAACCGAGCCTGGCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTtgcctg > 6:249845/1‑149 (MQ=255) cAGGCTGAACCGAGCCTGGCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATgca < 2:130928/149‑1 (MQ=255) cTGAACCGAGCCTGGCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATgcagca > 4:223563/1‑148 (MQ=255) aCCGAGCCTGGCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACAcc > 6:93866/1‑148 (MQ=255) cGAGCCTGGCGATCTGGAACAACCTGAAGCTGGCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCaa < 5:62965/149‑1 (MQ=255) cTGGCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTc < 3:288995/149‑1 (MQ=255) ggCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAAc > 7:125617/1‑143 (MQ=255) ggCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAAc < 8:125617/143‑1 (MQ=255) gCGATCTGGAACAACCTGAAGCTGCCTCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTcgc < 4:254633/148‑1 (MQ=255) gCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTcgc < 7:65085/148‑1 (MQ=255) cTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTtgcctg < 2:50171/119‑1 (MQ=255) cTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTtgcctg > 1:50171/1‑119 (MQ=255) ggacaacCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCca < 6:332393/143‑1 (MQ=255) ggacaacCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCca > 5:332393/3‑145 (MQ=255) ccTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGtat < 3:69219/149‑1 (MQ=255) aaGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATAcc < 6:12593/148‑1 (MQ=255) gcTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTGGc > 4:63466/1‑149 (MQ=255) aaaTCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTGGCCCg < 3:223563/148‑1 (MQ=255) aaaTCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTGGCCCg < 3:63466/148‑1 (MQ=255) ttttGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTGGCCCGGCAAcc > 4:195047/1‑149 (MQ=255) ttGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTGGCCCGGCAAc < 2:199773/146‑1 (MQ=255) gCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTGGCCCGGCAACCTACCa > 3:32658/1‑149 (MQ=255) gCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTGGCCCGGCAACCTACCa > 2:267485/1‑149 (MQ=255) cTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTGGCCCGGCAACCTACCATCAGGAAGcc > 2:202/1‑149 (MQ=255) ttAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTgg < 5:251080/123‑1 (MQ=255) ttAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTgg > 6:251080/1‑123 (MQ=255) cgaaaaTGAATAAGGCTTTAGTCTATGACCAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTGGCCCGGCAACCTACCATCAGGAAGCCTGc > 5:93860/4‑149 (MQ=38) aTGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTGGCCCg > 6:119593/1‑120 (MQ=255) aTGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTGGCCCg < 5:119593/120‑1 (MQ=255) ggCTTTAGTCTATGACCAAAGCCTTAATCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTGGCCCGGCAACCTACCATCAGGAAGCCTGCTTCAGCATc > 5:172451/1‑145 (MQ=255) ggCTTTAGTCTATGACCAAAGCCTTAATCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTGGCCCGGCAACCTACCATCAGGAAGCCTGCTTCAGCATc < 6:172451/145‑1 (MQ=255) gTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTGGCCCGGCAACCTACCATCAGGAAGCCTg > 1:72096/1‑128 (MQ=255) gTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTGGCCCGGCAACCTACCATCAGGAAGCCTg < 2:72096/128‑1 (MQ=255) aTAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTGGCCCGGCaa > 2:89549/1‑106 (MQ=255) aTAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTGGCCCGGCaa < 1:89549/106‑1 (MQ=255) gACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTGGCCCGGCAACCTACCATCAGGAAGCCTGCTTCAGCATCGTCAGCGCCCTCGCCCa > 7:135759/1‑149 (MQ=255) tAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTGGCCCGGCAACCTACCATCAGGAAGCCTGCTTCAGCATCGTCAGCGCCCTCGCCCAGc > 5:159978/1‑148 (MQ=255) | TTGCAAGGCGGCGCGCCAGGCCTGCACTTCTATACCTTGAACCAGGCTGAACCGAGCCTGGCGATCTGGAACAACCTGAAGCTGCCGCGCTGAAATCTTTTGGCAAAGTCTGCTTAAGAAATGATTAAGGCTTTGGTCATAGACTAAAGCCTTATTCATTTTCGGGTTAAACAGGTCTTGCCTGCCATGCAGCACACCCAACCTTCGCGCCCACAGCTTGTATACCTGGCTTTTGGCCCGGCAACCTACCATCAGGAAGCCTGCTTCAGCATCGTCAGCGCCCTCGCCCAGC > NC_002947/5670319‑5670610 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |