Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,672,372 | G→C | 7.4% | G208R (GGC→CGC) | PP_4979 → | substrate‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,672,372 | 0 | G | C | 7.4% | 159.4 / 2.6 | 51 | G208R (GGC→CGC) | PP_4979 | substrate‑binding protein |
Reads supporting (aligned to +/- strand): ref base G (22/25); new base C (2/2); total (24/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AGCCAACTTCGGCAAGCTGATACTGGGCCGCATCGACCTGGTGATCACCGACCGCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAGCCGGCCTATGCAGCGA‑TCAGCAACCGTTATACAACCGACACTGGAAACATTCTCAACGCCGTTGAGCAGCAGG > NC_002947/5672227‑5672519 | agCCAACTTCGGCAAGCTGATACTGGGCCGCATCGACCTGGTGATCACCGACCGCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGc < 6:310327/148‑1 (MQ=255) ccAACTTCGGCAAGCTGATACTGGGCCGCATCGACCTGGTGATCACCGACCGCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTg > 7:225849/1‑149 (MQ=255) ccAACTTCGGCAAGCTGATACTGGGCCGCATCGACCTGGTGATCACCGACCGCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTg > 3:271015/1‑149 (MQ=255) cAACTTCGGCAAGCTGATACTGGGCCGCATCGACCTGGTGATCACCGACCGCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCCCAGGTACTGCGCCTgg > 3:280961/1‑149 (MQ=255) aCTTCGGCAAGCTGATACTGGGCCGCATCGACCTGGTGATCACCGACCGCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCCCAGGTACTGCGCCTggcg < 4:280961/149‑3 (MQ=255) aGCTGATACTGGGCCGCTTCGACCTGGTGATCAGCGACCGCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAATAACTGCCGCTGGTAATCAGCCGCCAGGCCCAGGTACTGCGCCTggcggctg < 6:16735/144‑7 (MQ=255) aGCTGATACTGGGCCGCATCGACCTCGTGATCACCGACCGCAGGGTGGGGCATTACATGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCCCAGGTACTGCGCCTggcggctg > 5:16735/1‑138 (MQ=255) cttaTACTGGGCCGCATCGACCTGGTGCTCACCGACCGCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTgg < 7:284966/146‑1 (MQ=255) gATACTGGGCCGCATCGACCTGGTGATCACCGACCGCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGt > 1:240345/1‑135 (MQ=255) gATACTGGGCCGCATCGACCTGGTGATCACCGACCGCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGt < 2:240345/135‑1 (MQ=255) aCTGGGCCGCATCGACCTGGTGATCACCGACCGCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGgcgc > 8:125088/1‑148 (MQ=255) tGGGCCGCATCGACCTCGTGATCACCGACCGCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGACGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAg > 2:15960/1‑149 (MQ=255) cATCGACCTGGTGATCACCGACCGCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTgg > 8:177129/1‑149 (MQ=255) cATCGACCTGGTGATCACCGACCGCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTgg < 7:177129/149‑1 (MQ=255) gTGATCACCGACCGCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGcc < 7:125088/147‑1 (MQ=255) aTCCCCGACCGCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGc < 5:215251/149‑1 (MQ=255) cACCGACCGCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGcc > 2:241412/1‑148 (MQ=255) accgaccgCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCg > 7:283929/1‑148 (MQ=255) cgaccgCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAag < 6:222731/149‑1 (MQ=255) accgCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGa < 2:251525/121‑1 (MQ=255) accgCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGa > 1:251525/1‑121 (MQ=255) gCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTg < 2:108053/149‑1 (MQ=255) aGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTg > 8:35534/1‑147 (MQ=255) ggggCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCg < 5:231990/134‑1 (MQ=255) ggggCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCg > 6:231990/1‑134 (MQ=255) gCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTc > 7:293729/1‑148 (MQ=255) aTTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCaat < 1:15960/149‑2 (MQ=255) tACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAg > 5:190033/1‑147 (MQ=255) cTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCACGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAg < 5:277109/147‑1 (MQ=255) cTCCGCCAGCTCGGCCTGCAACAGCAAGTAGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTAACTGGCCCTGGTGCGAAAGCCTGGTCGCGAGGCACTGTCCGTGCCCATTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAGcc > 8:195516/1‑149 (MQ=255) gCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAGCCGGcc > 5:303651/1‑149 (MQ=255) ccAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAGCCGGCCt > 7:95415/1‑149 (MQ=255) gCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAGCCGGCCTATg < 4:271015/149‑1 (MQ=255) aCAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAGCCGGCCTATGCAGCGA‑TCAGc > 8:187037/1‑148 (MQ=255) gTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCttt < 2:153838/90‑1 (MQ=255) gTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAGCCGGCCTATGCAGCGA‑TCAGCAACCGTta < 8:95415/149‑1 (MQ=255) gTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAGCCGGCCTATGCAGCGA‑TCAGCAACCGTta < 6:303651/149‑1 (MQ=255) acggtGGTAATCAGCCGGCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAGCCGGCCTATGCAGCGA‑TCAGCAACCGTTATACAACCGacac < 8:283929/145‑1 (MQ=255) gTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAGCCGGCCTATGCAGCGA‑TCAGCAACCGTTATACAACCGACACTg > 1:124227/1‑145 (MQ=255) gTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAGCCGGCCTATGCAGCGA‑TCAGCAACCGTTATACAACCGACACTg < 2:124227/145‑1 (MQ=255) ccgccAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAGCCGGCCTATGCAGCGA‑TCAGCAACCGTTATACAACCGACACTGGAAACATTCTCa < 7:35534/149‑1 (MQ=255) ggCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAGCCGGCCTATGCAGCGA‑TCAGCAACCGTTATACAAcc < 6:136742/124‑1 (MQ=255) cgcAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAGCCGGCCTATGCAGCGA‑TCAGCAACCGTTATACAACCGACACTGGAAACATTCTCAACGCCGtt > 7:51941/1‑149 (MQ=255) cgcAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAGCCGGCCTATGCAGCGA‑TCAGCAACCGTTATACAACCGACACTGGAAACATTCTCAACGCCGtt < 6:190033/149‑1 (MQ=255) gcAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAGCCGGCCTATGCAGCGA‑TCAGCAACCGTTATACAACCGACACTGGAAACATTCTCAACGCCGt > 8:160362/1‑147 (MQ=255) gcAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAGCCGGCCTATGCAGCGA‑TCAGCAACCGTTATACAACCGACACTGGAAACATTCTCAACGCCGt < 7:160362/147‑1 (MQ=255) gTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAATAGCTGCAGCGGTTCAAGCAGGAGCCGGCCTATGCAGCGATTCAGCAACCGTTATACAACCGACACTGGAAACATTCTCAACGCCGTTGag < 1:241412/149‑1 (MQ=255) ccTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAGCCGGCCTATGCAGCGA‑TCAGCAACCGTTATACAACCGACACTGGAAACATTCTCAACGCCGTTGagcag > 7:227332/1‑148 (MQ=255) ccTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAGCCGGCCTATGCAGCGA‑TCAGCAACCGTTATACAACCGACACTGGAAACATTCTCAACGCCGTTGagcag > 8:63145/1‑148 (MQ=255) cTGGGCCTGGTGCGCAAGGCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGTAGCCGGCCTATGCAGCGA‑TCAGCAACCGTTATACAACCGACACTGGAAACATTCTCAACGCCGTTGAgcagca < 7:195516/149‑1 (MQ=255) tGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAGCCGGCCTATGCAGCGA‑TCAGCAACCGTTATACAACCGACACTGGAAACATTCTCAACGCCGTTGAGcagcag < 8:227332/149‑1 (MQ=255) ggCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAGCCGGCCTATGCAGCGA‑TCAGCAACCGTTATACAACCGACACTGGAAACATTCTCAACGGCGTTGagaatgttt < 7:81304/148‑8 (MQ=255) | AGCCAACTTCGGCAAGCTGATACTGGGCCGCATCGACCTGGTGATCACCGACCGCAGGGTGGGGCATTACCTGCTCCGCCAGCTCGGCCTGCAACAGCAAGTCGAAGAACTGCCGCTGGTAATCAGCCGCCAGGCGCAGTACCTGGGCCTGGTGCGCAAGCCTGGGCGCGAGGCACTGGCCGTGGCCTTTGCCGAAGAGCTGCAGCGGTTCAAGCAGGAGCCGGCCTATGCAGCGA‑TCAGCAACCGTTATACAACCGACACTGGAAACATTCTCAACGCCGTTGAGCAGCAGG > NC_002947/5672227‑5672519 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |