| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,696,767 | C→T | 16.0% | T3I (ACA→ATA) | hslV → | ATP‑dependent HslVU protease peptidase subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,696,767 | 0 | C | T | 16.0% | 52.6 / 3.9 | 25 | T3I (ACA→ATA) | hslV | ATP‑dependent HslVU protease peptidase subunit |
| Reads supporting (aligned to +/- strand): ref base C (12/9); new base T (2/2); total (14/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.83e-01 | |||||||||||
GGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCCCCCCACCCCCATATGAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGTGCGCCGCCTGTACCACGGCCAGGTCATCGCGG > NC_002947/5696624‑5696895 | ggtcATGCCGGCGAATGCCTTCAAATAGTCCCCCCGCCAAGCGCGACCATTCTTCCCCCCCGGTTGAAATCCTTCCCCCCACCCCCATATGAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCg < 5:92969/146‑1 (MQ=255) cccGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCAATCATCCCCCCCGGTTGAAATCCTTCCCCCCACCCCCATATGAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTg < 6:212511/148‑1 (MQ=255) gcgcGACCATTCATCCCCCGCGGTTGAAATCCTTCCCCCGACCGCCATTTGAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTa < 3:198609/124‑1 (MQ=255) caacacccccaTATGAGTCTGCATAAGGCACTTTCGCCACGCTGCGTGGAGACTCTACCATTGAACACAATCGTTTCTCTCCGACGTAACGCCAAAGTCGTAATGGGCGGAGACGGCCAGGTATCCCTCGGCAAAACCGTGATGAAAgg > 4:91368/4‑149 (MQ=255) ccacccccaTATGAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGc > 1:239034/1‑148 (MQ=255) gAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCATAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGc > 1:156964/1‑118 (MQ=255) gAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCATAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGc < 2:156964/118‑1 (MQ=255) gAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCATAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGc > 1:152126/1‑118 (MQ=255) gAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCATAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGc < 2:152126/118‑1 (MQ=255) gTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGCCCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCaagaag > 3:27934/1‑146 (MQ=255) gTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCaagaag < 4:27934/146‑1 (MQ=255) tCTGCATCAGGCACTTTCGCCCCGCTGCGTCGAGACTCACCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGCCAACGCCAAGAAGGt > 4:271140/1‑147 (MQ=255) gCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCaagaag < 4:235093/142‑1 (MQ=255) gCATCAGGCACTTTCGCCCCGCTGCGTGGAGACACTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCaagaag > 3:235093/1‑142 (MQ=255) aTCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGTGcgccgc > 4:181005/1‑149 (MQ=255) aGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGTGCGCCGCCTg > 5:258240/1‑149 (MQ=255) tttCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGAAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCACCGCCAAGAAGGTGCGCCGCCTGTACCAc > 5:260281/1‑149 (MQ=255) ccccGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGTGCGCCGCCTGTACCACg > 5:311918/1‑145 (MQ=255) ccccGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGTGCGCCGCCTGTACCACg < 6:311918/145‑1 (MQ=255) cccGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGTGCGCCGCCTGTACCACGGCCAg > 8:18942/1‑149 (MQ=255) gagaCTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGTGCGCCGCCTGTACCACGGCCAGGTCATCGCgg < 7:18942/148‑1 (MQ=255) gaCTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCg > 6:116734/1‑89 (MQ=255) gaCTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCg < 5:116734/89‑1 (MQ=255) tcCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGTGCGCCGCCTGTAc < 5:186453/122‑1 (MQ=255) tcCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGTGCGCCGCCTGTAc > 6:186453/1‑122 (MQ=255) | GGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCCCCCCACCCCCATATGAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGTGCGCCGCCTGTACCACGGCCAGGTCATCGCGG > NC_002947/5696624‑5696895 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |