| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 58,750 | T→A | 14.8% | intergenic (‑661/+27) | PP_5424 ← / ← PP_0050 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 58,750 | 0 | T | A | 14.8% | 182.8 / 21.5 | 74 | intergenic (‑661/+27) | PP_5424/PP_0050 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (37/26); new base A (4/7); total (41/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.01e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.65e-01 | |||||||||||
AGTAGGGATTTCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAGGTGGCGCGCTTTCCA > NC_002947/58604‑58896 | aGTAGGGATTTCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCagcagc > 7:139783/1‑149 (MQ=255) aGGGATTTCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCgg < 7:199165/148‑1 (MQ=255) gATTTCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCAGCAGCGGGCtt > 2:62674/1‑149 (MQ=255) aTTTCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTGTTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCttt > 6:326495/1‑149 (MQ=255) aaggggtgCTTTTCACAGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTA‑ATATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCtttt > 1:269170/8‑149 (MQ=255) ctgggCTTTTCTGTGAAAAGCAGCCCTTCATTTCACAAAAAAATTGGCTAAGATTCCAATTTCACGGGTTCTGGCCTATCACCTATTTTGTGAACCTAGAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCAGCAGCGGGCTTTTTa < 4:46620/145‑1 (MQ=255) ctcGTCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGGCACTAAAAAGCCCGCAGCAGCGGGCTTTTTa < 8:237034/148‑1 (MQ=255) ctcGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCAGCAGCGGGCTTTTTa < 8:139783/148‑1 (MQ=255) atcGGCTTTTCTGTTAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGTGTCTGGCCTATCACCTATTTTTTGAACCTACAAGGTT‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTa < 8:45849/147‑1 (MQ=255) tcGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGt > 2:95352/1‑149 (MQ=255) gtgCTTTTCACAGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTg > 2:172025/3‑149 (MQ=255) ggCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGCTAATTCGCCAGACACTAAAAAGCCCGCAGCAGCGGGCTTTTTa < 1:62674/146‑1 (MQ=255) ttttCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCTAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTAGCCAGACACTAAAAAGCCCGCTGCTGCGGGGTTTTTAGTGACTg > 4:174631/1‑149 (MQ=255) tgtgAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCaaa > 2:209100/1‑148 (MQ=255) tgAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGGCACTAAAAAGCCCGCAGCAGCGGGCTTTTTAGTGTCTggcgaa < 4:199866/147‑6 (MQ=38) aaaaGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAAt > 2:71036/1‑148 (MQ=255) aaaaGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATc < 3:251160/149‑1 (MQ=255) aaaGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCAGCAGCGGGCttt < 6:248883/129‑1 (MQ=255) aaaGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCAGCAGCGGGCttt > 5:248883/1‑129 (MQ=255) cACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑g < 2:69051/149‑1 (MQ=255) cccTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTa > 5:256708/1‑125 (MQ=255) cccTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTa < 6:256708/125‑1 (MQ=255) cccTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCg > 2:82575/1‑149 (MQ=255) tttCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGaa > 6:81187/1‑149 (MQ=255) gAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGc > 6:583/1‑149 (MQ=255) gAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGACCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCAGGTGAGAATGTTAACTATcaca > 6:587/1‑145 (MQ=255) aGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTg < 5:81187/149‑1 (MQ=255) cAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGc < 6:277970/96‑1 (MQ=255) cAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGc > 5:277970/1‑96 (MQ=255) cAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATg < 1:95352/149‑1 (MQ=255) ggggTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAg > 4:223709/1‑148 (MQ=255) ggTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTACGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGaa < 1:71036/149‑1 (MQ=255) gCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGt < 2:246046/148‑1 (MQ=255) gCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTc > 7:3999/1‑149 (MQ=255) gtATCAGCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCCGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCACACAATGAGTA‑GCCGGTGAGAATGTTCACGAGCACACCGCTGGCATTGGCCACCAGACCTTAGTGGc > 4:40314/2‑149 (MQ=255) aCCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCAtt > 5:59409/1‑148 (MQ=255) aCCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTc < 1:172025/149‑1 (MQ=255) aCCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTc < 2:269170/149‑1 (MQ=255) ccTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTca > 8:243980/1‑149 (MQ=255) ccTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTca > 1:316116/1‑149 (MQ=255) ctgttttGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTcac < 5:326495/146‑1 (MQ=255) cTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTca > 1:13413/1‑148 (MQ=255) cTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGACCACCAGAACATAGTCGCCATTca > 7:160448/1‑148 (MQ=255) cTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGACCACCAGAACATAGTCGCCATTca > 3:8912/1‑148 (MQ=255) ttGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATAc < 6:59409/148‑1 (MQ=255) tgtgAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACa < 7:243980/148‑1 (MQ=255) tgtgAAACTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCAATTCACATACa < 6:241817/148‑1 (MQ=255) tgAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGACCACCAGAACATAGTCGCCATTCACATACAGcc < 4:8912/149‑1 (MQ=255) gAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGACCACCAGAACATAGTCGCCATTCACATACAGcc < 8:160448/148‑1 (MQ=255) cTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGGAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACga > 2:221846/1‑149 (MQ=255) aCAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTc > 2:134307/1‑132 (MQ=255) aCAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACgat > 5:168775/1‑148 (MQ=255) ggTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCa > 8:104363/1‑149 (MQ=255) ggTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCa > 8:174072/1‑149 (MQ=255) ggTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCATGCAAACAATAAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGGAGACATTCAAAAACAGCAAAAgaatag > 4:241725/1‑143 (MQ=255) tg‑tAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAATCAATCAGTA‑GCCGGTGAGAATGTTGACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCACg > 7:129068/1‑149 (MQ=255) tg‑tAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGATTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCACg < 6:168775/149‑1 (MQ=255) g‑tAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCAc > 3:181300/1‑147 (MQ=255) ctAAATCGCCAGACACTAAAAACCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCAtt < 4:46938/123‑1 (MQ=255) tAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCACGa < 2:316116/148‑1 (MQ=255) aaTTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTcaca < 1:256750/126‑1 (MQ=255) aaTTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTcaca > 2:256750/1‑126 (MQ=255) aTTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCACGAGGt < 8:3999/149‑1 (MQ=255) ttCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACa > 4:92899/1‑128 (MQ=255) ttCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACa < 3:92899/128‑1 (MQ=255) gCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCACCGATGATCACGAGGTGgcg > 3:38407/1‑149 (MQ=255) cgatcTAAAAAGCCGGCAGCAGCGGGCTTTTTAGTGCCTTCAAACTATCAGTT‑GGCGGTGAGTATGTTCACGATCACACCGATGTCAATGGCCACCAGAAAATAGTCGACATTCACATACAGGCAACGATGATCACTATTTGGCGCATa < 8:178046/145‑1 (MQ=255) tAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACCGCCAACGATGATCACGAGGTg > 7:261304/1‑137 (MQ=255) tAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACCGCCAACGATGATCACGAGGTg < 8:261304/137‑1 (MQ=255) tAAAAAGCCCGCAGCAGCGGGCTTTTTAGTGTCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAGGt > 2:310708/1‑149 (MQ=255) aaaaGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAg < 2:247549/145‑1 (MQ=255) aaaaGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAg > 1:247549/1‑145 (MQ=255) aaaaGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAGGTgg > 6:327107/1‑149 (MQ=255) aaaaGCCCGCAGCAGCGGGCTTTTTAGTGCCTGCAAAAAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGATGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAgagcg > 7:178046/1‑145 (MQ=255) cGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAGGTGGCGCGCtt > 6:158473/1‑149 (MQ=255) ctgctgCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAGGTGGCGCGCTTTc < 5:158473/149‑1 (MQ=255) ctgcGGTCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGATCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATTATCACGAGGTGGCGCATACAGGTGGCGCGCTTTCca < 5:587/148‑1 (MQ=255) ctgcGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCCTTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAGGTGGCGCGCTTTCca < 5:583/148‑1 (MQ=255) | AGTAGGGATTTCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTG‑TAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTA‑GCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAGGTGGCGCGCTTTCCA > NC_002947/58604‑58896 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |