| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,807,985 | T→C | 11.2% | intergenic (+120/+35) | mrcA → / ← maeB | penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,807,985 | 0 | T | C | 11.2% | 212.7 / 13.5 | 80 | intergenic (+120/+35) | mrcA/maeB | penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B |
| Reads supporting (aligned to +/- strand): ref base T (37/34); new base C (5/4); total (42/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAAGCGACGCCGATGGATCTGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCTTGGCCACAGCATCGGAAACGACG > NC_002947/5807839‑5808128 | gAAGCGACGCCGATGGATCTGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGc > 7:117769/1‑149 (MQ=255) cGCCGATGGATCTGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCgg < 1:190268/149‑1 (MQ=255) cGCCGATGGATCTGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCgg < 8:117769/149‑1 (MQ=255) ccGATGGATCTGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCgggg < 3:269146/149‑1 (MQ=255) tGGATCTGTTCTAAGGCAGCGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAATTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGCCTCATTCGAGCCGGCGCttt > 2:268859/1‑149 (MQ=255) ggATCTGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCtttt > 7:258350/1‑149 (MQ=255) tCTGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGGCCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGCGACGGGGCTTTTTTa > 5:131844/1‑149 (MQ=255) tCTGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCGCATGAGCCggg > 6:130046/1‑140 (MQ=255) tCTGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCGCATGAGCCggg < 5:130046/140‑1 (MQ=255) tGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCg < 3:74683/136‑1 (MQ=255) tGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCg > 4:74683/1‑136 (MQ=255) tGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATg > 8:216013/1‑149 (MQ=255) tGTTCTAAGGCAGGGCGACTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑ACTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTAATGCGAGCCGGGGCTTTTTTATg > 7:137127/1‑149 (MQ=255) ttCTAAGGCAGGGCGCCTGACTCGGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCGCATGAGCCGGGGCTTTTTTATgg < 5:327293/148‑2 (MQ=38) ttCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCtttttt < 8:258350/144‑1 (MQ=255) ttCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTc > 2:223477/1‑149 (MQ=255) ttCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTc > 3:28860/1‑149 (MQ=255) tgcTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTCGGCGCTCGATCTGATCGGCGCCACAAGGGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGACCCGGGGCtttttt < 5:206591/142‑1 (MQ=255) aaGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑t > 5:167510/1‑148 (MQ=255) aaGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑t < 6:167510/148‑1 (MQ=255) ggCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCGCATGAGCCGGGGCttt < 1:149172/130‑1 (MQ=255) ggCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCGCATGAGCCGGGGCttt > 2:149172/1‑130 (MQ=255) ggCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCaa > 2:116782/1‑149 (MQ=255) ccTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAg > 6:246948/1‑149 (MQ=255) aCTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCg < 1:223477/148‑1 (MQ=255) aCTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGt < 7:216013/149‑1 (MQ=255) cTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAACCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGtt < 2:159259/149‑1 (MQ=255) tCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGtt > 3:225605/1‑148 (MQ=255) tCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGtt > 6:278203/1‑148 (MQ=255) tCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGtt > 7:57027/1‑148 (MQ=255) tCAGGTTGTGCGTGGTCGCTCGATCTGATAGGCGCCACAAGTTCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTg < 8:137127/149‑1 (MQ=255) cgcTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGc > 6:198420/1‑149 (MQ=255) gATCTGATAGGCGCCACAAGTGCCCTGACCAAGACCTTGCATCGCTTGACAGATTCCCAAGCCCCTTAAAATAGCCCCGGCTCATGAGAGCGGGGGCTTTTTTATGTCGG‑TTGCTGCAATCAGCCGTTGATCACTTCATCCACGCTGGt < 1:268859/149‑1 (MQ=255) aTCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGt > 3:176349/1‑147 (MQ=255) aTCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGt > 5:175732/1‑147 (MQ=255) cTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCACGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑Ttgctg < 7:125474/112‑1 (MQ=255) gATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑Ttgctgc < 5:92050/111‑1 (MQ=255) gATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑Ttgctgc > 6:92050/1‑111 (MQ=255) aTAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCgg < 3:189982/148‑1 (MQ=255) aTAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCgg < 5:271483/148‑1 (MQ=255) gcgcCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAAt > 1:85731/1‑149 (MQ=255) ccACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCt > 3:186410/1‑149 (MQ=255) acaAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTc < 4:225605/149‑1 (MQ=255) caAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGCATTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCgg < 1:67528/139‑1 (MQ=255) caAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCgg > 2:67528/1‑138 (MQ=255) aaGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCgg < 4:28860/149‑1 (MQ=255) aaGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCg > 3:75814/1‑148 (MQ=255) aGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGa < 5:246948/149‑1 (MQ=255) cccTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATaa < 8:57027/148‑1 (MQ=255) cccTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAg < 5:198420/149‑1 (MQ=255) ccTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAgg > 7:178040/1‑149 (MQ=255) ccTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCACCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑GTGCTGCAATCAGCCCTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAgg > 3:167930/1‑149 (MQ=255) ccAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAggg < 4:186410/149‑1 (MQ=255) cAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGATCCGGGGCTTTTTTATGTCGC‑TTGCGGCAATCAGCCGTTGAACACTTCATCCACGCTGGTAAGCGGGTAATGCTTCGGATAAGGCAGGGt < 6:131844/149‑1 (MQ=255) cAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTg > 4:225808/1‑99 (MQ=255) cAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTg < 3:225808/99‑1 (MQ=255) cAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTaa > 4:264513/1‑129 (MQ=255) cAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAggg > 5:287582/1‑148 (MQ=255) acacCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAg > 4:24478/1‑149 (MQ=255) cAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGcc < 8:178040/148‑1 (MQ=255) gC‑CCTGACACATTAGCAAGCCCCATAATAAAGCCGCGGCTCTTGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCTGa < 4:167930/149‑1 (MQ=255) c‑ccTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGAt > 2:260460/1‑149 (MQ=255) c‑ccTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGAt < 2:85731/149‑1 (MQ=255) cTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTc > 4:270536/1‑149 (MQ=255) acacATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGAt > 4:249768/1‑149 (MQ=255) cccAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGcc > 1:164982/1‑149 (MQ=255) ccAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATcc > 6:194620/1‑85 (MQ=255) ccAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATcc < 5:194620/85‑1 (MQ=255) cAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCtt > 6:100904/1‑149 (MQ=255) cgacATAAAAAAGCCCCGGCTCGCATGAGCCGGGGCTTTTTTATGGGGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGACAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCTTg < 6:217956/143‑1 (MQ=37) cgacATAAAAAAGCCCCGGCTCGCATGAGCCGGGGCTTTTTTATGGGGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGACAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCTTg > 5:217956/4‑146 (MQ=37) cATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCTTGGCcaca < 3:270536/149‑1 (MQ=255) aaaaaGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCTTGGCCACAGCAt < 1:116782/149‑1 (MQ=255) aaaaGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCTTGGCCACAGCATc > 8:69121/1‑149 (MQ=255) ccccGGCTCGCATGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCTTGGCCACAGCATCGGaaa > 8:167017/1‑149 (MQ=255) ccccGGCTCGCATGAGCCGGGGCTTTTTTATGGGGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCTTGGCCACAGCATCGGaaa > 2:189673/1‑149 (MQ=39) ccccGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCTTGGCCACAGCATCGGaaa < 3:24478/149‑1 (MQ=255) ccGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCTTGGCcac < 7:260370/136‑1 (MQ=255) ccGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCTTGGCcac > 8:260370/1‑136 (MQ=255) gCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCTTGGCCACAGCATCGGAAacgacg < 5:278203/149‑1 (MQ=255) | GAAGCGACGCCGATGGATCTGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGC‑CCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGC‑TTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCTTGGCCACAGCATCGGAAACGACG > NC_002947/5807839‑5808128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |