| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,988,840 | C→T | 27.6% | intergenic (+134/‑412) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,988,840 | 0 | C | T | 27.6% | 125.4 / 49.8 | 77 | intergenic (+134/‑412) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| Reads supporting (aligned to +/- strand): ref base C (24/31); new base T (12/9); total (36/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.16e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
GGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTA > NC_002947/5988700‑5988987 | ggACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCAc > 4:247974/1‑149 (MQ=255) tGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCt > 5:48666/1‑149 (MQ=255) tGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCt < 3:247974/149‑1 (MQ=255) gcgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGtctc > 6:63566‑M2/61‑149 (MQ=255) cgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCg < 5:63566‑M2/90‑1 (MQ=255) aGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTc > 8:108235/1‑148 (MQ=255) gCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGat < 6:50654/149‑1 (MQ=255) gCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGa > 1:139085/1‑148 (MQ=255) tgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGatat > 4:170730‑M2/56‑149 (MQ=255) ttttGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATc > 2:210933/1‑149 (MQ=255) gcgcGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGcgtc < 6:238031/149‑1 (MQ=255) gcgTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGcgtcg > 8:109662/1‑148 (MQ=255) cgTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTa > 8:52121/1‑149 (MQ=255) tcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTa > 1:2050‑M2/46‑148 (MQ=255) cgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATc > 6:218927‑M2/45‑139 (MQ=255) cgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATc < 5:218927‑M2/95‑1 (MQ=255) ccTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTacaaa < 6:148811/149‑1 (MQ=255) ccgctctgtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTacaaa < 7:210590‑M2/107‑1 (MQ=255) ttGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCt > 5:315963/1‑128 (MQ=255) ttGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCt < 6:315963/128‑1 (MQ=255) agagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAgg < 3:170730‑M2/112‑1 (MQ=255) ggTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCg < 7:52121/149‑1 (MQ=255) gtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCgg < 5:67622‑M2/115‑1 (MQ=255) gTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCgg < 1:99780/149‑1 (MQ=255) tttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTacaaa > 8:210590‑M2/34‑140 (MQ=255) gTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTc < 5:305647/148‑1 (MQ=255) gTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTc < 7:108235/148‑1 (MQ=255) gcgacTGGGAGATGGAGCGCCGCCGGCGGGGCGCTTCGCGGGTAAAGCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGAGCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCTGTc‑gcgc < 2:245530/145‑1 (MQ=12) gcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTc‑gcgcgc < 2:62655‑M2/123‑1 (MQ=255) ccatgagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑gcgcgcgc > 4:283943‑M2/25‑149 (MQ=255) tgAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCt < 2:147563/148‑1 (MQ=255) tgAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTg > 1:147563/1‑149 (MQ=255) tgAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTg < 7:109662/149‑1 (MQ=255) agatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTgg < 3:283943‑M2/129‑1 (MQ=255) gaTGGGGCGCCGCCCGGGGGGGGC‑TCGGGGGGAAACCCGGCCCTTACGTTGGTTCCGGGCCTTTAATTCGTGTGGTACGGGCCTGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGca < 1:96939/149‑1 (MQ=19) aTTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATcgc < 6:206527/114‑1 (MQ=255) aTTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATcgc > 5:206527/1‑114 (MQ=255) cgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTacaaacaa < 1:152138‑M2/110‑1 (MQ=255) cgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTacaaacaa > 2:152138‑M2/16‑125 (MQ=255) cgcccgcGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGACTGGTGCAGGAGGGac > 7:213915/1‑148 (MQ=14) ccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTgg < 6:48666‑M2/144‑1 (MQ=255) gcgcTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGaa > 7:155648/1‑148 (MQ=255) gcTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCAGCGCGCGCCTGGCACAGGAGGGATTGGCCAGaaac < 1:210933/149‑1 (MQ=255) ccc‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGCTATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCggg > 4:70874/1‑149 (MQ=255) ccc‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCggg > 8:156211/1‑149 (MQ=255) cc‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGaaaca < 1:180761/134‑1 (MQ=255) cc‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGaaaca > 2:180761/1‑134 (MQ=255) cc‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGAGTGGCCAGATACAAACGTAGGAGCGGGt > 5:304370/1‑149 (MQ=255) cc‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCAAAC‑GCGCGCGACTGGTGCAGGAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGtt > 1:264794/1‑149 (MQ=19) gCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGttt < 2:139085/149‑1 (MQ=255) cTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCACCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGATCGCGTTTAccc < 8:66633‑M2/149‑4 (MQ=255) gtttgtttGGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACCCCTCGATAAAGCGTCGTACAAACAAGCCGGTC‑GCGCGCGCCAGGCCCAGGAGGGATTGGCCAGAAACAAACGTAGGCGCggc > 4:110402/1‑137 (MQ=255) gtttgtttCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCggg < 3:110402/138‑1 (MQ=255) ttgtttCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGACTGGTGCAGGAGGGACTGGCC‑GAAACCAACGTAGGAGCGGGTTTACCCGCGACgc > 3:259413/1‑149 (MQ=2) gtttCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcg < 1:257080‑M2/149‑12 (MQ=255) tttCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTgg > 5:285088/1‑110 (MQ=255) tttCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTgg < 6:285088/110‑1 (MQ=255) tttCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgc < 8:213920‑M2/149‑13 (MQ=255) tttCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATAGCGTCGTTCAAACAAGGCGGTC‑GCGCGCGCCTGGTGCAGGAGGGACTGGCC‑GAAACAAACGTATGAGCGGGTTTACCCGCGAAGagcc > 1:92237/1‑149 (MQ=2) gCCAGTTATTACTGTGGGACGCGCACGCGAGCACC‑TGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgg < 5:145865‑M2/149‑20 (MQ=255) ccAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGc > 1:272496/1‑104 (MQ=255) ccAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGc < 2:272496/104‑1 (MQ=255) caattATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTGGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGACTGGTGCAGGAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCcgcgcgag > 1:232895/4‑146 (MQ=9) cAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAc < 1:117168‑M2/130‑2 (MQ=255) cAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAc > 2:117168‑M2/1‑129 (MQ=255) ttATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcccgcgcgg < 5:194823‑M2/149‑24 (MQ=255) aTTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcccgcgcggc > 6:194823‑M2/1‑124 (MQ=255) ccTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctc < 8:268498‑M2/149‑29 (MQ=255) cTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctc < 4:170588‑M2/148‑29 (MQ=255) gtgGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCCGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgcccaa < 8:199455‑M2/148‑31 (MQ=255) tgGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatc > 7:268498‑M2/1‑117 (MQ=255) aCGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAt > 2:101856/1‑149 (MQ=255) cgcgCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATg < 3:170588/149‑1 (MQ=255) gcgcACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATgg < 7:156211/149‑1 (MQ=255) gcgcgcgACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGACTGGTGCAGGAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCcg > 7:78544/4‑112 (MQ=17) cACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGTATCGGGTTTACCCGCGAAGCGCCGCGCGTGCGGCGCTCGATCTCATGGgcg > 8:130336/1‑149 (MQ=255) gcgACCGCCTTGGGGCATGTCTCGATATCGTGTCGTACAAACAAGGCGGTC‑GCGCGCGACTGGTGCAGGAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctcacaggcgctg < 2:77157‑M2/148‑45 (MQ=255) ccgccttggGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGACTGGTGCAGGAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctcacaggcgctgaaaat < 2:99675‑M2/146‑50 (MQ=255) cccccTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCaaaaa > 6:193229/1‑149 (MQ=255) cccccTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCaaaa > 4:300666/1‑148 (MQ=255) cccccTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTCGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCaaaaa < 1:101856/149‑1 (MQ=255) cctTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGACTGGTGCAGGAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctcacaggcgctgaaaatcct < 8:165176‑M2/149‑53 (MQ=255) cccTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGTATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACt < 7:66633/149‑1 (MQ=255) ccTGGCGCACGCCTCGATATCGCGTCGTACTAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgctcgggcggcgctcgatctc < 1:26682‑M2/131‑35 (MQ=255) ccTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgctcgggcggcgctcgatctc > 2:26682‑M2/1‑97 (MQ=255) ccTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcg < 1:126470‑M2/122‑26 (MQ=255) | GGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTC‑GCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTA > NC_002947/5988700‑5988987 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |