Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 550,549 | C→G | 10.8% | intergenic (+30/‑112) | tufB → / → rpsJ | elongation factor Tu‑B/30S ribosomal protein S10 |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 550,549 | 0 | C | G | 10.8% | 151.3 / 6.1 | 54 | intergenic (+30/‑112) | tufB/rpsJ | elongation factor Tu‑B/30S ribosomal protein S10 |
Reads supporting (aligned to +/- strand): ref base C (23/25); new base G (3/3); total (26/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TTCAGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAA > NC_002947/550404‑550692 | ttCAGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGc > 8:133681/1‑149 (MQ=255) aGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCggg < 7:133681/149‑1 (MQ=255) gATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCgggg > 1:130705/1‑149 (MQ=255) aCTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGATTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGtt < 8:478/148‑1 (MQ=255) cTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTGAGCGGGGGtttt < 1:236747/149‑1 (MQ=255) tGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGttttt > 5:50356/1‑149 (MQ=255) ttACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTGAGCGGGGGtttt < 8:298476/146‑1 (MQ=255) ttACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTGAGCGGGGGtttt > 7:298476/1‑146 (MQ=255) ttACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGtttttt < 4:315742/148‑1 (MQ=255) aCCCTGAGCAAGACCCTCGCACTGGAAGCAGGGCGGCGCTTCGCTATCCGTGATGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGtttttttt < 4:234675/148‑1 (MQ=25) ccTGATCAAGACCATCGCAATGGAAGACGGTCTGCGTTAGGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGATAAAACCCCCGCTCAGCGGGGGtttt < 1:107468/142‑1 (MQ=255) ccTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATAGAGTAATCACTCGACCCATTGAAAAAACCCCCGCTCAGCGCGGGattt > 2:107468/1‑142 (MQ=255) aTCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGt < 3:107680/149‑1 (MQ=255) cATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACt > 7:299997/1‑148 (MQ=255) cATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTa < 8:69112/149‑1 (MQ=255) gAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGc < 6:25628/148‑1 (MQ=255) aaGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGt > 6:247870/1‑149 (MQ=255) gACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAAtt < 6:81220/139‑1 (MQ=255) gACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAAtt > 5:81220/1‑139 (MQ=255) cGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCCGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCtat < 6:333204/149‑1 (MQ=255) tCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAg > 8:252792/1‑148 (MQ=255) tGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGaa > 6:246795/1‑148 (MQ=255) gcTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCAc < 6:50356/149‑1 (MQ=255) tATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCtata > 6:309111/1‑135 (MQ=255) tATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCtata < 5:309111/135‑1 (MQ=255) tCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGTGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGt < 8:299997/149‑1 (MQ=255) tCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGt < 4:244288/149‑1 (MQ=255) tCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGt > 8:32695/1‑149 (MQ=255) tCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGt < 7:252792/149‑1 (MQ=255) ccGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTa > 1:309213/1‑142 (MQ=255) ccGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTa < 2:309213/142‑1 (MQ=255) ggCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTg < 5:246795/149‑1 (MQ=255) cGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGaa > 6:282343/1‑148 (MQ=255) gtgGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTTCGTCCGTTGGGAACAGCCTg > 7:163476/1‑148 (MQ=255) tgGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCGGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGa < 2:130705/149‑1 (MQ=255) gCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGAGTCCGTTGGGAACAGCCTGGAGt > 5:129939/1‑149 (MQ=255) cAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCt > 8:296377/1‑149 (MQ=255) tcatcGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAAt > 8:164504/1‑149 (MQ=255) aTCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGTCGACAATAGAATCACGCCTCCTTATAGCGGGCGTATGTCGTCCGTTCGGAACCGCCTCGACTAATAAATCCAAAGCaa > 8:289195/1‑148 (MQ=255) aTCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCaa > 4:54748/1‑148 (MQ=255) ccGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCaaa < 6:129939/149‑1 (MQ=255) aTTGAAAAAACCCCCGCTCAGCGGGGGTTGGGTTGATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGt < 4:101066/120‑1 (MQ=255) gAAAAAACCCACGCTCAGCGGGGGTTTTTTTTATTGGGTTTACACTAATTGGGGCCGTCTATAGAATCACGCATCCATTTAGCGGGCGTAGTTCGTACGTTGAGAACAGACTGGAGTCTGAAATCCAAAGCAAAATCAGCAAATCAGTa > 2:153800/1‑149 (MQ=255) aaaaaaaCCCCCGCTGAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTa > 2:27597/2‑149 (MQ=255) acactaCCCCCGCTGAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTAt < 7:289195/144‑1 (MQ=255) aaaaaaCCCCCGCTGAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTTGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTAt > 1:279158/1‑149 (MQ=255) aaaaaaCCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCaa < 3:112907/132‑1 (MQ=255) aaaaaaCCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCaa > 4:112907/1‑132 (MQ=255) aaaaaCCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTAt < 5:282343/148‑1 (MQ=255) aaaaCCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAg > 8:178183/1‑136 (MQ=255) aaaaCCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAg < 7:178183/136‑1 (MQ=255) ccccGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGaa < 4:250320/114‑1 (MQ=255) ccccGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGaa > 3:250320/1‑114 (MQ=255) ccGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGaa < 5:247870/149‑1 (MQ=255) | TTCAGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAA > NC_002947/550404‑550692 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |