Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 603,658 | T→A | 12.3% | intergenic (+54/‑38) | ribAB‑I → / → ribH | bifunctional 3,4‑dihydroxy‑2‑butanone 4‑phosphate synthase/GTP cyclohydrolase II/6,7‑dimethyl‑8‑ribityllumazine synthase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 603,658 | 0 | T | A | 12.3% | 101.9 / 4.1 | 46 | intergenic (+54/‑38) | ribAB‑I/ribH | bifunctional 3,4‑dihydroxy‑2‑butanone 4‑phosphate synthase/GTP cyclohydrolase II/6,7‑dimethyl‑8‑ribityllumazine synthase |
Reads supporting (aligned to +/- strand): ref base T (15/23); new base A (4/2); total (21/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.78e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
TGCGCAAGATGCGCCTGATGAGTTCGCCGATGAAGTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTGGTAAGCGGTGCCGTT > NC_002947/603513‑603806 | tgCGCAAGATGCGCCTGATGAGTTCGCCGATGAAGTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCGAGACACCTGTCGACGCCGCTTGt > 4:186099/1‑149 (MQ=255) tgCGCAAGATGCGCCTGATGAGTTCGCCGATGAAGTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTACTCGAGTCCAGACCCCTGTCGAGGCCGCTTGt < 6:181451/149‑1 (MQ=255) gcCTGATGAGTTCGCCGATGAAGTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCATGTATGAGGCCTccc > 4:197104/1‑147 (MQ=255) gatgaGTTCGCCGATGAAGTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGTTTGTATGCGGCCTCGCTCtt > 6:280077/1‑149 (MQ=255) gATGAAGTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAat < 7:137834/149‑1 (MQ=255) gTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGa < 8:288262/149‑1 (MQ=255) tCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGGCGAGGCCGCATACAAGCGGCCTCgacag < 6:8618/128‑5 (MQ=255) tCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGGCGAGGCCGCATACAAGCGGCCTCgacag > 5:8618/1‑124 (MQ=255) aCGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGTTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGAc < 5:280077/149‑1 (MQ=255) gATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTTGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCt > 2:5485/1‑148 (MQ=255) gATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCATCCGAGTGACTTGTGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTg < 3:186099/149‑1 (MQ=255) cGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCt > 3:179545/1‑103 (MQ=255) cGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCt < 4:179545/103‑1 (MQ=255) gATCTGGAAGTTGTAGAATACGTGCCCTCCGATTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGaa < 8:271467/148‑1 (MQ=255) gATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGCCCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAAAATCGGAATGACCCGGAAGACCCTCGAAg > 6:243540/1‑149 (MQ=255) gATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCg > 6:61338/1‑146 (MQ=255) gATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGaa < 5:61338/148‑1 (MQ=255) gATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGaa < 5:205058/148‑1 (MQ=255) gTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTGGTATGCGGCCTCGCTGTTGAAGATGAGAAAATCGGAATCAACCTGAAGACCCTCGAAGGTACCTTCATCg > 5:231133/1‑149 (MQ=255) gTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCGTGTATTCGGCCGAGCTCTTGAAGATGAGAATATAGGAAATACCCTGAAGACCCTCGAAGGTACcatcatag > 2:87851/1‑147 (MQ=255) tAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCAt < 5:126951/131‑1 (MQ=255) aGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGc < 3:197104/148‑1 (MQ=255) cTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCt < 1:206963/109‑1 (MQ=255) cTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCt > 2:206963/1‑109 (MQ=255) tCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGccccc < 4:272558/139‑1 (MQ=255) tCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGccccc > 3:272558/1‑139 (MQ=255) tGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGGCGAGGCCGCATACAAGCGGCCTCg > 1:189284/1‑71 (MQ=37) tGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGGCGAGGCCGCATACAAGCGGCCTCg < 2:189284/71‑1 (MQ=37) cTTGAGGCGGCATTGGCGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTtgg < 5:236668/149‑1 (MQ=255) cTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTtgg < 3:145872/149‑1 (MQ=255) aGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTtggtgg < 4:42780/148‑1 (MQ=255) gcATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGGGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGCCCATCGAACGGACCTTCATCCCCCCCCAACGTCGCGATGCTTTGGTTGTTGGcc > 6:60326/1‑149 (MQ=255) tctGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTgg < 3:203453/135‑1 (MQ=255) tctGCTCGAGTCCAGACCCCTGTCGAGGCCGCGTGTATGCGGCCTCGCTCTTGAAGATGAGAATATAGGAATGACCCTGAAGACCATAGAAGGTACCTTCAAAGCCCCCAAAGGTCGCGATGCTTTGGTGGTTgg > 4:203453/1‑135 (MQ=255) cTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCtt < 5:60326/146‑1 (MQ=255) tCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCGCTTGAAGATGAGAATATAGGAATGAACCAGAAGAACATCGAAGGTACCTTAATAGCCCCCAAAGGTAGCTATGCGTTTGTGGTTGGCCGCTTCAACAGCTTCGtt > 4:78717/1‑149 (MQ=255) tCGAGGCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCGCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGGCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGtt < 5:243540/149‑1 (MQ=255) cGAGTCCAGACCCCTGTCGAGGCCGCTTGTATTCGGCCTAGCTCTTGAAGATTAGAATATAGGAATTACCCTGAAGACCATCGAAGGTACCTTAATAGCCCCCAAAGGTCg > 6:303012/1‑111 (MQ=255) cGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCg < 5:303012/111‑1 (MQ=255) gAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGtt < 3:157015/147‑1 (MQ=255) cccTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGc < 5:201110/122‑1 (MQ=255) ccTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGCCCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTgg > 7:234024/1‑149 (MQ=255) cTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTgg > 7:1345/1‑148 (MQ=255) agagcGAGGCCGCATACAAGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTgg > 2:121543/5‑148 (MQ=255) gCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTGGTAAGCGGTGcgg > 5:283467/1‑147 (MQ=255) cTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTGGTAAGCGGTGCCGt < 1:87851/149‑1 (MQ=255) ttGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTGGTTGTCGAAAGCCTGGTAAGCGGTGCCGtt < 6:231133/149‑1 (MQ=255) | TGCGCAAGATGCGCCTGATGAGTTCGCCGATGAAGTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTGGTAAGCGGTGCCGTT > NC_002947/603513‑603806 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |