Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 618,346 C→T 5.6% V75M (GTG→ATG)  PP_0532 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947618,3460CT 5.6% 219.1 / 2.0 71V75M (GTG→ATG) PP_0532hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (31/36);  new base T (2/2);  total (33/38)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.77e-01

GTCCAGCGTGCGGCCGGCCCTGTCGATGCGCAGTTCGGTCCGGTAACCCACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGACGTGTCCATCTTCTGGTC  >  NC_002947/618200‑618493
                                                                                                                                                   |                                                                                                                                                   
gTCCAGCGTGCGGCCGGCCCTGTCGATGCGCAGTTCGGTCCGGTAACCCACCGCCCCCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCg                                                                                                                                                   >  6:163544/1‑149 (MQ=255)
 tCCAGCGTGCGGCCGGCCCTGTCGATGCGCAGTTCGGTCCGGTAACCCACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCgg                                                                                                                                                  <  8:56097/149‑1 (MQ=255)
           ggccggccCTGTCGATGCGCAGTTCGGTCCGGTAACCCACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGAt                                                                                                                                        <  7:235217/149‑1 (MQ=255)
            gccggccCTGTCGATGCGCAGTTCGGTCCGGTAACCCACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATg                                                                                                                                       >  2:16741/1‑149 (MQ=255)
               ggccCTGTCGATGCGCAGTTCGGTCCGGTAACCCACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTg                                                                                                                                    <  1:281360/149‑1 (MQ=255)
                gccCTGTCGATGCGCAGTTCGGTCCGGTAACCCACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTgg                                                                                                                                   >  7:253996/1‑149 (MQ=255)
                      tCGATGCGCAGTTCGGTCCGGTAACCCACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCCGGCGCTg                                                                                                                              <  4:78171/148‑1 (MQ=255)
                        gATGCGCAGTTCGGTCCGGTAACCCACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGa                                                                                                                            <  1:16741/148‑1 (MQ=255)
                        gATGCGCAGTTCGGTCCGGTAACCCACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGa                                                                                                                            <  8:12319/148‑1 (MQ=255)
                        gATGCGCAGTTCGGTCCGGTAACCCACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGAc                                                                                                                           >  4:237111/1‑149 (MQ=255)
                                gTTCGGTCCGGTAACCCACCGCCCCCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGc                                                                                                                   <  5:163544/149‑1 (MQ=255)
                                 ttCGGTCCGGTAACCCACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGa                                                                                                                         <  2:17797/142‑1 (MQ=255)
                                 ttCGGTCCGGTAACCCACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGa                                                                                                                         >  1:17797/1‑142 (MQ=255)
                                               ccACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCATCGGGGTACCCGGTGCTgt                                                                                                                                   <  6:331356/118‑2 (MQ=255)
                                               ccACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCATCGGGGTACCCGGTGCTgt                                                                                                                                   >  5:331356/1‑117 (MQ=255)
                                               ccACCGCAACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAgg                                                                                                    >  4:161964/1‑149 (MQ=255)
                                                cACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGc                                                                                                   >  1:109098/1‑149 (MQ=255)
                                                cACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGAATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACAATTCGGCTTGACAACCCACAGGc                                                                                                   >  8:267417/1‑149 (MQ=255)
                                                 aCCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCg                                                                                                  >  6:192197/1‑149 (MQ=255)
                                                     ccaccaGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCAGGCTACCCCAGCGCAGCATTCCCATGCACCATCAACAGCACCGGGTACCCCGATGGTGGCGCGGGACGTTTCGGCTTGCCAACCCCCGGGCgg                                                                                                 >  1:250314/1‑147 (MQ=255)
                                                      caccaGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGc                                                                                                                   <  4:80619/127‑1 (MQ=255)
                                                      caccaGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGc                                                                                                                   >  3:80619/1‑127 (MQ=255)
                                                      caccaGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGt                                                                                             <  5:192197/149‑1 (MQ=255)
                                                         cagcagGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGAc                                                                                          <  3:195648/149‑1 (MQ=255)
                                                                        gCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCAGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGc                                                                             <  3:299331/147‑1 (MQ=255)
                                                                         cccACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGa                                                                          <  2:250314/149‑1 (MQ=255)
                                                                           cACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGc                                                                                    >  3:20178/1‑137 (MQ=255)
                                                                           cACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGc                                                                                    <  4:20178/137‑1 (MQ=255)
                                                                                cGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTc                                                                       >  7:98904/1‑145 (MQ=255)
                                                                                 gAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGAAGCATTCACATCGAGCATCCACAGCACCGGCTACCACGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTc                                                                       >  5:212094/1‑144 (MQ=255)
                                                                                  aGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGAt                                                                  >  4:290011/1‑148 (MQ=255)
                                                                                   gCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATc                                                                 >  5:116195/1‑148 (MQ=255)
                                                                                    ccTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATc                                                                 >  7:265207/1‑147 (MQ=255)
                                                                                    ccTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCaa                                                               <  3:237111/149‑1 (MQ=255)
                                                                                     cTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATc                                                                 >  5:130505/1‑146 (MQ=255)
                                                                                     cTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCaa                                                               <  6:130505/148‑1 (MQ=255)
                                                                                       gTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCgg                                                                                                                    >  8:53729/1‑93 (MQ=255)
                                                                                       gTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCgg                                                                                                                    <  7:53729/93‑1 (MQ=255)
                                                                                       gTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCt                                                            >  7:137269/1‑149 (MQ=255)
                                                                                           aGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGt                                                        >  8:48814/1‑149 (MQ=255)
                                                                                                 tgctgATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGCTCAAGCTGGGTGAAGt                                                   >  7:260652/1‑148 (MQ=255)
                                                                                                  gctgATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGa                                                 >  3:306034/1‑149 (MQ=255)
                                                                                                   ctgATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGAt                                                <  2:111516/149‑1 (MQ=255)
                                                                                                      aTCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAg                                              <  1:221843/148‑1 (MQ=255)
                                                                                                         cA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCa                                          <  4:306034/149‑1 (MQ=255)
                                                                                                          a‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGTGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCTGGCCATCGTCAGAGTCCAGATCAAGCTGTGTGAAGTGATAGGCCAg                                         <  6:212094/149‑1 (MQ=255)
                                                                                                          a‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGcc                                                                            >  7:71182/1‑114 (MQ=255)
                                                                                                          a‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGcc                                                                            <  8:71182/114‑1 (MQ=255)
                                                                                                               tCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTcc                                     >  8:51649/1‑149 (MQ=255)
                                                                                                                  ccAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGcc                                                                            >  6:122794/1‑107 (MQ=255)
                                                                                                                  ccAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTgg                                  <  8:265207/149‑1 (MQ=255)
                                                                                                                  ccAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTgg                                  <  7:48814/149‑1 (MQ=255)
                                                                                                                      cgcAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCt                              <  3:161964/149‑1 (MQ=255)
                                                                                                                        cagcaTTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGt                            <  8:253996/149‑1 (MQ=255)
                                                                                                                          gcaTTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCg                                                                                                  >  6:144481/1‑77 (MQ=255)
                                                                                                                          gcaTTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCg                                                                                                  <  5:144481/77‑1 (MQ=255)
                                                                                                                             ttCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAacac                       <  6:116195/149‑1 (MQ=255)
                                                                                                                                ccATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTcc                                     <  4:7270/132‑1 (MQ=255)
                                                                                                                                ccATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTcc                                     >  3:7270/1‑132 (MQ=255)
                                                                                                                                ccATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGa                    <  7:51649/149‑1 (MQ=255)
                                                                                                                                ccATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGa                    >  7:23433/1‑149 (MQ=255)
                                                                                                                                   tCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTcc                                     <  3:2349/129‑1 (MQ=255)
                                                                                                                                   tCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTcc                                     >  4:2349/1‑129 (MQ=255)
                                                                                                                                   tCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGACgt                 <  8:137269/149‑1 (MQ=255)
                                                                                                                                         aTCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGACGTGTCCAt           <  3:223191/149‑1 (MQ=255)
                                                                                                                                             ccaGCATCGGGGTACCCGGTGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTg                             >  1:4173/2‑127 (MQ=255)
                                                                                                                                             ccaGCATCGGGGTACCCGGTGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTg                             <  2:4173/126‑1 (MQ=255)
                                                                                                                                             acaGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGCCGCAGGCCATCGGCCGACTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGACGTGTCCAtcttc       >  1:79306/1‑149 (MQ=255)
                                                                                                                                               aGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGACGTGTCCATCTTCTg     <  3:290011/149‑1 (MQ=255)
                                                                                                                                                gCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGACGTGTCCATCTTCTgg    <  8:23433/149‑1 (MQ=255)
                                                                                                                                                  aCCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGACGTGTCCATCTTCTGGTc  <  2:109098/149‑1 (MQ=255)
                                                                                                                                                   ccGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAg                                                    <  2:172849/98‑1 (MQ=255)
                                                                                                                                                   ccGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAg                                                    >  1:172849/1‑98 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
GTCCAGCGTGCGGCCGGCCCTGTCGATGCGCAGTTCGGTCCGGTAACCCACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCA‑GCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGACGTGTCCATCTTCTGGTC  >  NC_002947/618200‑618493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑