Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 706,345 G→A 8.9% A608T (GCA→ACA)  PP_0599 → paraquat‑inducible protein B

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947706,3450GA 8.9% 126.6 / 2.7 45A608T (GCA→ACA) PP_0599paraquat‑inducible protein B
Reads supporting (aligned to +/- strand):  ref base G (23/18);  new base A (2/2);  total (25/20)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.92e-01

GTGCTGCTACGGGCGCGCATTACCGAATCGGCGGATCGCATTGCCCGTGCCGGTACGCAGTTCTGGGTGGTCAAGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCAGTGCGCCACGCCGTGGCTCGATCAAGCCGGGTGTGCCGGTTACCTATCGTGAG  >  NC_002947/706198‑706491
                                                                                                                                                   |                                                                                                                                                  
gTGCTGCTACGGGCGCGCATTACCGAATCGGCGGATCGCATTGCCCGTGCCGGTACGCAGTTCTGGGTGGTCAAGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTgcagccagc                                                                                                                                                   <  4:13880/149‑1 (MQ=255)
  gctgctACGGGCGCGCATTACCGAATCGGCGGATCGCATTGCCCGTGCCGGTACGCAGTTCTGGGTGGTCAAGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGAGACATTGATAGGTGGGCAGTACCTGGAAGTgcagccagcag                                                                                                                                                 >  4:219468/1‑149 (MQ=255)
     gctACGGGCGCGCATTACCGAATCGGCGGATCGCATTGCCCGTGCCGGTACGCAGTTCTGGGTGGTCAAGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTgcagccagcagcc                                                                                                                                               >  4:198063/1‑148 (MQ=255)
      ctACGGGCGCGCATTACCGAATCGGCGGATCGCATTGCCCGTGCCGGTACGCAGTTCTGGGTGGTCAAGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTgcagccagcagcc                                                                                                                                               >  2:236616/1‑147 (MQ=255)
            gcgcgcATTACCGAATCGGCGGATCGCATTGCCCGTGCCGGTACGCAGTTCTGGGTGGTCAAGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCg                                                                                                                                       >  8:189452/1‑149 (MQ=255)
                           tCGGCGGATCGCATTGCCCGTGCCGGTACGCAGTTCTGGGTGGTCAAGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGa                                                                                                                        <  7:176488/149‑1 (MQ=255)
                           tCGGCGGATCGCATTGCCCGTGCCGGTACGCAGTTCTGGGTGGTCAAGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGa                                                                                                                        <  6:27638/149‑1 (MQ=255)
                                 gATCGCATTGCCCGTGCCGGTACGCAGTTCTGGGTGGTCAAGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCa                                                                                                                   >  2:287731/1‑148 (MQ=255)
                                           cccGTGCCGGTACGCAGTTCTGGGTGGTCAAGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCaa                                                                                                                                             >  1:98231/1‑112 (MQ=255)
                                           cccGTGCCGGTACGCAGTTCTGGGTGGTCAAGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCaa                                                                                                                                             <  2:98231/112‑1 (MQ=255)
                                           cccGTGCCGGTACGCAGTTCTGGGTGGTCAAGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATGTACTCGCCCTGccc                                                                                                        >  8:133844/1‑149 (MQ=255)
                                            ccGTGCCGGTACGCAGTTCTGGGTGGTCAAGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGcc                                                                                                        >  7:99287/1‑148 (MQ=255)
                                              gTGCCGGTACGCAGTTCTGGGTGGTCAAGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGaa                                                                                                     <  1:145207/149‑1 (MQ=255)
                                                   ggTACGCAGTTCTGGGTGGTCAAGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCAcc                                                                                                >  8:136544/1‑149 (MQ=255)
                                                       cGCAGTTCTGGGTGGTCAAGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGa                                                                                             <  4:139907/148‑1 (MQ=255)
                                                        gCAGTTCTGGGTGGTCAAGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCgg                                                                                              >  3:271759/1‑146 (MQ=255)
                                                        gCAGTTCTGGGTGGTCAAGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCgg                                                                                              <  4:271759/146‑1 (MQ=255)
                                                        gCAGTTCTGGGTGGTCAAGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAgg                                                                                           <  1:287731/149‑1 (MQ=255)
                                                                   ggggcAAGCCGGCCCTGGGCCTGGTGCGCACTGAAACCCTGGACACCTTGATAGGTGGGCAGTACCTGGACGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCa                                                                                <  7:133844/145‑1 (MQ=255)
                                                                     gtCAAGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCa                                                                                >  5:12387/1‑147 (MQ=255)
                                                                       cAAGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAgg                                                                            >  5:259983/1‑149 (MQ=255)
                                                                        aaGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAACAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGc                                                                                                               >  6:35074/1‑113 (MQ=255)
                                                                        aaGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAACAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGc                                                                                                               >  6:30303/1‑113 (MQ=255)
                                                                        aaGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAACAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGc                                                                                                               <  5:30303/113‑1 (MQ=255)
                                                                        aaGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAACAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGc                                                                                                               <  5:35074/113‑1 (MQ=255)
                                                                           ccGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCgg                                                                        <  7:189452/149‑1 (MQ=255)
                                                                               cccTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTg                                                                    <  4:248061/149‑1 (MQ=255)
                                                                                ccTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGc                                                                   >  8:273650/1‑149 (MQ=255)
                                                                                ccTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGc                                                                   >  2:288478/1‑149 (MQ=255)
                                                                                    ggCCTGGAGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCAtt                                                               <  4:45174/149‑1 (MQ=255)
                                                                                       cTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGAc                                                            <  8:99287/149‑1 (MQ=255)
                                                                                          gTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCt                                                         <  6:259983/149‑1 (MQ=255)
                                                                                                  tGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCAAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATAGCCCTGGCCGAAGCACCCGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCAGTgcgc                                                 >  1:16754/1‑149 (MQ=255)
                                                                                                           ggACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCAGTGCGCCACGCCGTg                                        >  8:74656/1‑149 (MQ=255)
                                                                                                            gACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCAGTGCGCCACGCCGTgg                                       >  7:273165/1‑149 (MQ=255)
                                                                                                                ccTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGTGCCAGAGGTCGGCCTGCCATTGACGCTCAGTGCGCCACGCCGTGGCTCg                                   <  1:236616/149‑1 (MQ=255)
                                                                                                                 cTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCAGTGCGCCACGCCGTGGCTCGa                                  >  2:43135/1‑149 (MQ=255)
                                                                                                                  ttGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCAGTGCGCCACGCCGTGGCTCGAt                                 >  6:122062/1‑149 (MQ=255)
                                                                                                                     aTAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCAGTGCGCCACGCCGTGGCTCGATc                                >  6:119727/1‑147 (MQ=255)
                                                                                                                       aGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCAGTGCGCCACGCCGTGGCTCGATCAAGc                            >  8:149777/1‑149 (MQ=255)
                                                                                                                        ggTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCAGTGCGCCACGCCGTGGCTCGATCAAGcc                           <  7:74656/149‑1 (MQ=255)
                                                                                                                           gggCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCAGTGCGCCACGCCGTGGCTCGATCAAGCCggg                        >  5:72877/1‑149 (MQ=255)
                                                                                                                                   ccTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCa                                                       >  1:126081/1‑110 (MQ=255)
                                                                                                                                   ccTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCa                                                       <  2:126081/110‑1 (MQ=255)
                                                                                                                                    cTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCAGTGCGCCACGCCGTGGCTCGATCAAGCCGGGTGTGCCGGt               <  1:288478/149‑1 (MQ=255)
                                                                                                                                    cTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCAGTGCGCCACGCCGTGGCTCGATCAAGCCGGGTGTGCCGGt               >  8:293790/1‑149 (MQ=255)
                                                                                                                                      ggAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCAGTGCGCCACGCCGTGGCTCGATCAAGCCGGgt                       <  3:112254/139‑1 (MQ=255)
                                                                                                                                      ggAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCAGTGCGCCACGCCGTGGCTCGATCAAGCCGGgt                       >  4:112254/1‑139 (MQ=255)
                                                                                                                                           tGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCAGTGCGCCACGCCGTGGCTCGATCAAGCCGGGTGTGCAGCTTACCTa         >  7:100965/1‑148 (MQ=255)
                                                                                                                                             cagccagcagccaAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCAGTGCGCCACGCCGTGGCTCGATCAAGCCGGGTGTGCCGGTTACCTATc       <  3:198063/148‑1 (MQ=255)
                                                                                                                                              agccagcagccaAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCAGTGCGCCACGCCGTGGCTCGATCAAGCCGGGTGTGCCGGTTACCTATCGt     <  7:149777/149‑1 (MQ=255)
                                                                                                                                                ccagcagccaAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCAGTGCGCCACGCCGTGGCTCGATCAAGCCGGGTGTGCCGGTTACCTATCGTGa   <  6:72877/149‑1 (MQ=255)
                                                                                                                                                 cagcagccaAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCAGAAGCACCGGAGGTAGCAGGGCCAGAGGTCTGCCTGCCATTGACGCTCAGTGCGCCACGCCGTGGCTCGATCAAGCCGGGTGTGCCGGTTACCTATCGTGAg  <  5:122062/149‑1 (MQ=255)
                                                                                                                                                  agcagccaAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCAGTGCGCCACGCCGTGGCTCGATCAAGCCGGGTGTGCCGGTTACCTATCGTg    >  8:212036/1‑146 (MQ=255)
                                                                                                                                                  agcagccaAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCAGTGCGCCACGCCGTGGCTCGATCAAGCCGGGTGTGCCGGTTACCTATCGTg    <  7:212036/146‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
GTGCTGCTACGGGCGCGCATTACCGAATCGGCGGATCGCATTGCCCGTGCCGGTACGCAGTTCTGGGTGGTCAAGCCGGCCCTGGGCCTGGTGCGCACTGAAAACCTGGACACCTTGATAGGTGGGCAGTACCTGGAAGTGCAGCCAGCAGCCAAGAACCGTGGGCCACAGCGCGATTTCATCGCCCTGGCCGAAGCACCGGAGGTAGCAGGGCCAGAGGTCGGCCTGCCATTGACGCTCAGTGCGCCACGCCGTGGCTCGATCAAGCCGGGTGTGCCGGTTACCTATCGTGAG  >  NC_002947/706198‑706491

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑