| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 152,157 | A→T | 14.8% | intergenic (‑51/+43) | PP_0143 ← / ← PP_0144 | membrane protein/insulinase family metalloprotease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 152,157 | 0 | A | T | 14.8% | 57.7 / 4.0 | 27 | intergenic (‑51/+43) | PP_0143/PP_0144 | membrane protein/insulinase family metalloprotease |
| Reads supporting (aligned to +/- strand): ref base A (12/11); new base T (2/2); total (14/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.76e-01 | |||||||||||
CCGATACCGGAGAGGAAACCGCCGAGCGCAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCACGAGCAAGGCC > NC_002947/152012‑152293 | ccGATACCGGAGAGGAAACCGCCGAGCGCAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATCTGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCaa < 1:157391/147‑1 (MQ=255)ccGATACCGGAGAGGAAACCGCCGAGCGCAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGTGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCaa < 1:236802/147‑1 (MQ=255)ccGATACCGGAGAGGAAACCGCCGAGCGCAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGc > 1:31479/1‑149 (MQ=255) ggAGAGGAAACCGCCGAGCGCAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGAGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGa > 7:139274/1‑147 (MQ=255) agGAAACCGCCGAGCGCAATGATGCCGGGGTAGCGCTGGAGTAGTGCGATGAGGCGCTGGCCGATATGGGGCATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGt < 1:79249/149‑1 (MQ=255) ccgAGTGCAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGTCGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTgg < 6:105914/149‑1 (MQ=255) ccgAGCGCAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTgg < 2:31479/149‑1 (MQ=255) cgcACTGCTGCCCGGGGAGCGCTTCAGTAGTTCGATGATGCCCTGGCCGATATGGGGGATTTGGGGCCCTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCaaaa < 2:76209/149‑1 (MQ=38) aaTGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGa > 5:17509/1‑149 (MQ=255) atgatgCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGAt < 6:17509/149‑1 (MQ=255) ccGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGGGAAAGCGTCGGTACTGGCAAAAGGATAccgcc > 5:54552/1‑148 (MQ=255) cGGGTAGCGCTTCAGTAGTTCGATGATGCGCTTTACGATATGGCGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGa < 2:29267/149‑1 (MQ=255) ttgCGGTGGACGTTTTGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTTCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGcaccac < 6:54552/147‑1 (MQ=255) tGGACGAGATGGGGGATTTGGGGCATTGGGGGCTACGCCAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGGACTGGCAAAAGGAGACCGCCGAGTTACCGCTGCCGTGTAGCACCACTGGGCCg > 8:218792/1‑149 (MQ=255) cGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGtt > 5:317792/1‑147 (MQ=255) tGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGcac > 3:177386/1‑130 (MQ=255) tGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGcac < 4:177386/130‑1 (MQ=255) ggggCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATgccgccgc > 2:133522/1‑149 (MQ=255) tACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGccc > 6:98978/1‑149 (MQ=255) gTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGcc > 3:163038/1‑149 (MQ=255) ggTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGc < 5:98978/149‑1 (MQ=255) ccAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCACGAGc > 7:98484/1‑148 (MQ=255) cAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCACGAGc > 2:175503/1‑147 (MQ=255) aGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCACGAGCAAg < 4:163038/149‑1 (MQ=255) ctctTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCACGAGCAAGGcc < 6:317792/149‑1 (MQ=255) ctttCGCGGGCTTGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGc < 2:27827/113‑1 (MQ=255) ctttCGCGGGCTTGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGc > 1:27827/3‑115 (MQ=255) tttCGCGGGCTTGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCACGa < 2:310726/138‑1 (MQ=255) tttCGCGGGCTTGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCACGa > 1:310726/2‑139 (MQ=255) | CCGATACCGGAGAGGAAACCGCCGAGCGCAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCACGAGCAAGGCC > NC_002947/152012‑152293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |