Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,161,009 | T→C | 6.6% | L274P (CTG→CCG) | gtsC → | mannose/glucose ABC transporter permease |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,161,009 | 0 | T | C | 6.6% | 176.9 / 2.1 | 60 | L274P (CTG→CCG) | gtsC | mannose/glucose ABC transporter permease |
Reads supporting (aligned to +/- strand): ref base T (24/32); new base C (2/2); total (26/34) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 |
CCGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATCCAGCTGTCGATCAAGGACGGCGAGTTCCTGATCCTGGTGGGC > NC_002947/1160867‑1161151 | ccGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGAcggc < 8:119481/149‑1 (MQ=255) ccGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGAcggc > 6:73905/1‑149 (MQ=255) cGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGAcggcc > 8:143609/1‑149 (MQ=255) gctCACCCTAGCCCTGAACAATCTTGGCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATTGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGAcggccg < 8:124882/147‑1 (MQ=255) aCCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGgcgc < 5:73905/149‑1 (MQ=255) aCCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCCGGCCGTCAGCCcgcg > 3:214240/1‑148 (MQ=255) ccGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCCGGCCGTCAGCCCgcgca < 4:214240/149‑2 (MQ=255) aGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTc > 7:198392/1‑148 (MQ=255) cccTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAg > 7:248469/1‑149 (MQ=255) cTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAggg < 4:226900/149‑1 (MQ=255) aaCAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGt < 8:198392/148‑1 (MQ=255) tCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGGCAAGGGGTAAGCCa > 7:263701/1‑149 (MQ=255) tGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATg > 5:282761/1‑149 (MQ=255) cgTCAATACCAGCACCGGGGCCAAGGAATACAACCCCGCCCTGCCCGCAGCGATGATCCCTGGCCTGCCAACCCTGCTGCCCTACGTGGAGGCACGCAAATATATCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCAggg < 6:242962/148‑1 (MQ=255) gTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATg < 5:2241/147‑1 (MQ=255) aaTACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCaa < 6:238009/148‑1 (MQ=255) cAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTc > 2:317004/1‑148 (MQ=255) aGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGa < 8:248469/149‑1 (MQ=255) aCCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACt > 2:48439/1‑149 (MQ=255) cGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTc > 6:212030/1‑149 (MQ=255) cGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCCGGCCGTCAGCCCgcgca < 5:93154/115‑2 (MQ=255) cGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCCGGCCGTCAGCCCgcgca > 6:93154/1‑114 (MQ=255) ggggCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCg < 6:282761/149‑1 (MQ=255) gCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCaa < 3:49457/149‑1 (MQ=255) ccAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCAt < 6:198677/127‑1 (MQ=255) ccAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCAt > 5:198677/1‑127 (MQ=255) ggAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGa < 1:317004/149‑1 (MQ=255) gAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGaa < 5:212030/149‑1 (MQ=255) cAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAg < 7:143609/148‑1 (MQ=255) aaCGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCTACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCAt > 5:132353/1‑116 (MQ=255) aaCGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCAt < 6:132353/116‑1 (MQ=255) aCATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACgg > 6:169680/1‑148 (MQ=255) aTGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGCCGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAg > 8:164417/1‑149 (MQ=255) aTGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCgg > 7:139535/1‑91 (MQ=255) aTGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCgg < 8:139535/91‑1 (MQ=255) gcggcAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGTCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCg < 5:169680/148‑1 (MQ=255) gcggcAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCg < 1:14753/148‑1 (MQ=255) gcAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGAcc > 4:84969/1‑135 (MQ=255) gcAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGAcc < 3:84969/135‑1 (MQ=255) gCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGcc < 8:150808/149‑1 (MQ=255) gatgatCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCg > 6:53290/1‑148 (MQ=255) tCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATAcc < 3:49136/149‑1 (MQ=255) cAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATc > 6:79655/1‑149 (MQ=255) aaCCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATc > 5:45402/1‑148 (MQ=255) cccTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATCCAg < 5:53290/149‑1 (MQ=255) tCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATCCAGCTGTCGAt > 6:133958/1‑148 (MQ=255) atgtggtgGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTTAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATCCAGCTGt < 2:227992/139‑1 (MQ=255) aCGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGGGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTAAAGGACATCCAGCTGTcagat > 1:227992/1‑142 (MQ=255) cGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATCCAGCTGTCGATCAAg < 5:79655/148‑1 (MQ=255) gtggtgGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATCCAGCTGTCGATCAAGGa > 4:72836/1‑149 (MQ=255) ggtggCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATCCAGCTGTCGATCAAGGACg > 2:35043/1‑149 (MQ=255) gcaggcaAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATCCAGCTGTCGATCAAGGACGGCGa < 8:219022/149‑1 (MQ=255) aaaTATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATCCAGCTGTCGATCAAGGACGGCGAGTTCCt > 4:147777/1‑149 (MQ=255) atatTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATCCAGCTGTCGATCAAGGACGGCGAGTTCCTGa < 3:147777/149‑1 (MQ=255) tttCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATCCAGCTGTCGATCAAGGACGGCGAGTTCCTGATc < 5:133958/148‑1 (MQ=255) ttCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATCCAGCTGTCGATCAAGGACGGCGAGTTCCt > 5:123043/1‑143 (MQ=255) ttCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATCCAGCTGTCGATCAAGGACGGCGAGTTCCt < 6:123043/143‑1 (MQ=255) tGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGCACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATCCAGCTGTCGATCAAGGACGGCGAGTTCCTGATCCtggtg < 3:231511/149‑1 (MQ=255) tGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATCCAGCTGTCGATCAAGGACGGCGAGTTCCTGATCCtggtg < 3:227243/149‑1 (MQ=255) gcgGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATCCAGCTGTCGATCAAGGACGGCGAGTTCCTGATCCTGGTGGGc < 1:35043/149‑1 (MQ=255) | CCGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATCCAGCTGTCGATCAAGGACGGCGAGTTCCTGATCCTGGTGGGC > NC_002947/1160867‑1161151 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |