Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,177,742 | A→G | 10.2% | T209A (ACG→GCG) | guaA → | glutamine‑hydrolyzing GMP synthase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,177,742 | 0 | A | G | 10.2% | 155.5 / 7.7 | 59 | T209A (ACG→GCG) | guaA | glutamine‑hydrolyzing GMP synthase |
Reads supporting (aligned to +/- strand): ref base A (25/27); new base G (3/3); total (28/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.07e-01 |
CCCCAAGCTGCCCGATCGCCGGCATGTACGACGACGTCCGCGGCTACTACGGCGT‑GCAGTTCCACCCCGAAGTGACCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGTTGACAGCTCGGTGGTTGCCGCGCTGCTGCACCGCGCCATCGGCGACCAGCTGACCTGC > NC_002947/1177596‑1177888 | ccccAAGCTGCCCGATCGCCGGCATGTAGGACGACGTCCGCGGCTACTACGGCGT‑GCAGTTCCACCCCGAAGTGACCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACg > 1:180819/1‑149 (MQ=255) aaGCTGCCCGATCGCCGGCATGTACGACGACGTCCGCGGCTACTACGGCGT‑GCAGTTCCACCCCGAAGTGACCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGt < 7:252339/149‑1 (MQ=255) ctgacGATCTCCTGCATGTCCGCCGACGTCCGCGGCTACTACGGCGT‑GCAGATCCACCCCGAAGTGACCCACACCAAGCAAGGGGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGGCGGCGTCCaa < 8:199239/145‑1 (MQ=255) cccGATCGCCGGCATGTACGACGACGTCCGCGGCTACTACGGCGT‑GCAGTTCCACCCCGAAGTGACCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGCCGTCCacag < 3:225888/149‑4 (MQ=255) cGATCGCCGGCATGTACGACGACGTCCGCGGCTACTACGGCGT‑GCAGTTCCACCCCGAAGTGACCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACAtc < 2:180819/149‑1 (MQ=255) tCGCCGGCATGTACGACGACGTCCGCGGCTACTACGGCGT‑GCAGTTCCACCCCGAAGTGACCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACAtcgtc < 6:42330/149‑1 (MQ=255) tCGCCGGCATGTACGACGACGTCCGCGGCTACTACGGCGT‑GCAGTTCCACCCCGAAGTGACCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACAtcgtc < 5:174653/149‑1 (MQ=255) ccGGCATGTACGACGACGTCCGCGGCTACTACGGCGT‑GCAGTTCCACCCCGAAGTGACCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGaa < 6:62096/149‑1 (MQ=255) cagCATGTACGACGACGTCCGCGGCTACTACGGCGT‑GCAGTTCCACCCCGAAGTGCCCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGGCGGCGTCCaa > 7:199239/3‑138 (MQ=255) cGGCATGTACGACGACGTCCGCGGCTACTACGGCGT‑GCAGTTCCACCCCGAAGTGACCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGGCGGCGTCCaa < 8:199240/138‑1 (MQ=255) cGGCATGTACGACGACGTCCGCGGCTACTACGGCGT‑GCAGTTCCACCCCGAAGTGACCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGGCGGCGTCCaa > 7:199240/1‑138 (MQ=255) cGGCATGTACGACGACGTCCGCGGCTACTACGGCGT‑GCAGTTCCACCCCGAAGTGACCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAg > 7:247388/1‑149 (MQ=255) tACGACGACGTCCGCGGCTACTACGGCGTGGCAGTTCCACCCCGAAGTGACCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCa > 1:24209/1‑149 (MQ=255) cgacgTCCGCGGCTACTACGGCGT‑GCAGTTCCACCCCGAAGTGACCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGcc > 7:54518/1‑148 (MQ=255) acgTCCGCGGCTACTACGGCGT‑GCAGTTCCACCCCGAAGTGACCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAg < 7:101229/149‑1 (MQ=255) ggCTACTACGGCGT‑GCAGTTCCACCCCGAAGTGACCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGgtgcgtgc < 7:130402/149‑1 (MQ=255) ctactaCGGCGT‑GCAGTTCCACCCCGAAGTGACCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTgcgc < 6:175116/149‑1 (MQ=255) cGT‑GCAGTTCCACCCCGAAGTGACCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGtt < 8:247388/149‑1 (MQ=255) cAGTTCCACCCCGAAGTGACCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAGAACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCg < 1:210309/148‑1 (MQ=255) gTTCCACCCCGAAGTGACCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCATGTGCGTGCCCA‑AGTAGGTTCGGcc > 6:254487/1‑148 (MQ=255) ccACCCCGAAGTGACCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACg > 8:102512/1‑149 (MQ=255) aCCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGGCGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTctg > 5:227754/1‑141 (MQ=255) aCCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGGCGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTctg < 6:227754/141‑1 (MQ=255) aCCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGccc > 2:31081/1‑106 (MQ=255) aCCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGccc < 1:31081/106‑1 (MQ=255) cccACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTg > 3:230210/1‑149 (MQ=255) ccACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAACCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGt > 2:190310/1‑149 (MQ=255) caagcaagGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCcggcg > 4:152695/1‑149 (MQ=255) caagcaagGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCcggcg < 8:54518/149‑1 (MQ=255) aagcaagGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTct > 7:265466/1‑131 (MQ=255) aagcaagGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTct < 8:265466/131‑1 (MQ=255) gcaagGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGgcggcg > 8:213387/1‑149 (MQ=255) agGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGTTTCGGCCAAGGTACTCCTGGCCCTGTCCGCCGCCGtt > 6:116492/1‑148 (MQ=255) gtggtCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGTTGa > 6:280244/1‑148 (MQ=255) tggtCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGGCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGTTGACa < 8:139935/149‑1 (MQ=255) tCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGTTGACAGCTCggtg > 6:88761/1‑149 (MQ=255) tCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGTTGACAGCTCGGTGGTTg < 7:213387/148‑1 (MQ=255) tCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGTTGACAGCTCGGTGGTTGc > 4:37936/1‑149 (MQ=255) cGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGtt > 6:230775/1‑129 (MQ=255) cGCTTCGTGCAGGACATCTGCGGCGGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGtt < 5:230775/129‑1 (MQ=255) gCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGTTGACAGCTCGGTGGTTGCcgcg > 5:52699/1‑149 (MQ=255) cTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGTTGACAGCTCGGTGGTTGCCgcgc > 1:207720/1‑149 (MQ=255) ctGCAGGACATCTGCGGCTGGGAAGCCCTGTGGACCGCGGCCCACATCGTCGTAG‑CCGCCCTCGCCCAGGTGCGGGCGCA‑AGGCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGTTGACAGCTCGGTGGTTGCCGCgctgct < 5:116492/148‑1 (MQ=255) tGCAGGACTTCTGCGGCTGTGAAGCCCGGTTGACGGGGGCCAACATCGTCGAAG‑TCGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGTTGACAGCTCGGTGGTTGCCGCGctgctg < 5:254487/149‑1 (MQ=255) tGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGTTGACAGCTCGGTGGTTGCCGCGctgctg < 5:280244/149‑1 (MQ=255) aCATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCaa < 2:172012/37‑1 (MQ=255) aCATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCaa > 1:172012/1‑37 (MQ=255) aCATCTGCGGCGGGGAAGCCCGGTGGCCGGCGGCCAACATCGTCGAAG‑ACGCCATCGCCCCGGGGCGTGCGCA‑AGTCGGTGCGGCCCACGTTCTGCTGGGCCTGTCCGGCGGCGTTGACAGCTCGGTGGTTGCCGCGCTGCTGCACcgc < 7:284751/149‑1 (MQ=255) cTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGc < 4:94083/97‑1 (MQ=255) cTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGc > 3:94083/1‑97 (MQ=255) cGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGTTGACAGCTCGGTGGTTGCCGCGCTGCTGCACCGCGCCATCg < 3:37936/149‑1 (MQ=255) ggCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGTTGACAGCTCGGTGGTTGCCGCGCTGCTGCACCGCGCCATCgg < 6:52699/149‑1 (MQ=255) tgAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGTTGACAGCTCGGTGGTTGCCGCGCTGCTGCACCGCGCCATCGGCGAc < 2:207720/148‑1 (MQ=255) tgtgGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGTTGACAGCTCGGTGGTTGCCGCGCTGCTGCACCGCGCCATCGGCGACCAGCTGAcc > 5:292721/1‑149 (MQ=255) tgGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGTTGACAGCTCGGTGGTTGCCGCgctgct > 1:176409/1‑119 (MQ=255) tgGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGTTGACAGCTCGGTGGTTGCCGCgctgct < 2:176409/119‑1 (MQ=255) tgGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGTTGACAGCTCGGTGGTTGCCGCGCTGCTGCACCGCGCCATCGGCGACCAGCTGACCt < 3:152695/148‑1 (MQ=255) tgGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGTTGACAGCTCGGTGGTTGCCGCGCTGCTGCACCGCGCCATCGGCGACCAGCTGACCTg > 8:79932/1‑149 (MQ=255) gACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCACAGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGTTGACAGCTCGGTGGTTGCCGCGCTGCTGCACCGCGCCATCGGCGACCAGCTGACCTGc > 1:75982/1‑149 (MQ=255) | CCCCAAGCTGCCCGATCGCCGGCATGTACGACGACGTCCGCGGCTACTACGGCGT‑GCAGTTCCACCCCGAAGTGACCCACACCAAGCAAGGTGGTCGTATCCTGTCCCGCTTCGTGCAGGACATCTGCGGCTGTGAAGCCCTGTGGACGGCGTCCAACATCGTCGAAG‑ACGCCATCGCCCAGGTGCGTGCGCA‑AGTCGGTTCGGCCAACGTTCTGCTGGGCCTGTCCGGCGGCGTTGACAGCTCGGTGGTTGCCGCGCTGCTGCACCGCGCCATCGGCGACCAGCTGACCTGC > NC_002947/1177596‑1177888 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |