Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,239,103 | A→C | 11.1% | intergenic (‑78/‑297) | argF ← / → PP_1080 | ornithine carbamoyltransferase/molybdopterin‑binding oxidoreductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,239,103 | 0 | A | C | 11.1% | 110.7 / 5.6 | 44 | intergenic (‑78/‑297) | argF/PP_1080 | ornithine carbamoyltransferase/molybdopterin‑binding oxidoreductase |
Reads supporting (aligned to +/- strand): ref base A (20/19); new base C (2/3); total (22/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 |
GTGGCGGATCACCCCGAGCAATTCGTCGGTGGTGAAGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGATTGCAAAGGGTGTTGCAAAGGGTGTCTTTACCCGTTGGCCCGTGCTGTTCTTTAT > NC_002947/1238957‑1239241 | gTGGCGGATCACCCCGAGCAATTCGTCGGTGGTGAAGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGc > 5:186622/1‑149 (MQ=255) gATCACCCCGAGCAATTCGTCGGTGGTGAAGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCTTACGCCGCagg < 8:278712/149‑3 (MQ=255) tCACCCCGAGCAATTCGTCGGTGGTGAAGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCTTACGCCGCaggtc < 1:238200/149‑5 (MQ=255) aCCCCGAGCAATTCGTCGGTGGTGAAGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTAATGAGGCACTACCTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGc < 8:213636/149‑1 (MQ=255) ccccGAGCAATTCGTCGGTGGTGAAGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTTCGGCGTAAGACGCACGGGGCg > 3:222181/1‑149 (MQ=255) cGAGCAATTCGTCGGTGGTGAAGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCgg > 6:302222/1‑147 (MQ=255) cGAGCAATTCGTCGGTGGTGAAGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCgg < 5:302222/147‑1 (MQ=255) gAGCAATTCGTCGGTGGTGAAGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGAc > 3:189557/1‑148 (MQ=255) gCAATTCGTCGGTGGTGAAGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGa > 5:17040/1‑148 (MQ=255) ttCGTCGGTGGTTAAGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAg < 1:119880/149‑1 (MQ=255) tcgGTGGTGAAGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGa > 2:183007/1‑148 (MQ=255) gtgAAGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGgcg < 3:81141/148‑1 (MQ=255) aattCCAGCAGGGTGATAAAGTGCCTAGCGCTCATGAGTGAATACCTTATCTGCAACGGTTTGCAGGTCGACGGTA‑TGGTTTTTTTTTACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCaa < 6:17040/145‑1 (MQ=255) cagcagGGCGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTAATCTGCAACGGTATGCAGGTAGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACta < 8:62424/148‑1 (MQ=255) cagcagGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCTCAATAGta > 6:212365/1‑148 (MQ=255) cagcagGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACtat < 7:296058/149‑1 (MQ=255) gcagGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATaa < 1:183007/149‑1 (MQ=255) ctatctgTGACTACCTTATCTGCAAGGGTTTGCAGGTCGTCCGTT‑TGGTTTTTTTTGACTACGGGGGTTAACTGCGGCGTAAGCGGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAggg < 4:23777/143‑1 (MQ=255) tGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTCCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGgagatcg > 3:23777/1‑146 (MQ=255) tACCTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAgcgg > 2:226555/1‑149 (MQ=255) ccTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAgcggc > 6:289867/1‑148 (MQ=255) ccTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAgcggc < 5:289867/148‑1 (MQ=255) ccTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAgcgg < 1:226555/147‑1 (MQ=255) ccTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACATGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAATTAAATGTCGCCTGAAGCCAAGGGGGGAAAAgcggcg > 1:278772/1‑149 (MQ=255) cttttgtGCAACGGTAGGCCGGTCCACCGTA‑TGTTTTTTTTTTACAACGGGGGTCACGTGCGGGGTACGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGt < 2:278772/143‑1 (MQ=255) ttATCTGCAACGGTATGCAGGTCGACCGTAGTGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGt > 1:192389/1‑149 (MQ=255) tCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGAtt > 2:282036/1‑149 (MQ=255) catgggTATTCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGAttg < 4:189557/142‑1 (MQ=255) cAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGtctatgca > 8:296543/1‑141 (MQ=255) aaCGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAAAACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGAttgca > 7:115747/1‑147 (MQ=255) tCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGAttgcaaagggtgttgcaaag < 6:186622/149‑1 (MQ=255) ccaCCGTC‑TGGTTTTTTTTCACAACGGGGGGTACCTTCGGCGTAAGCGGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGAttgcaaagggtgttgcaaagg < 8:115747/147‑1 (MQ=255) gcccGTA‑TGTTTTTGTTTGACATCGGGGGTGCCCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGACAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGGGAttgcaaagggtgttgcaaaggg < 4:222181/147‑1 (MQ=255) gACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAATTAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGAttgcaaagggtgttgcaaaggg > 5:259836/1‑149 (MQ=255) gACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGATTGCAAAGGGTGTTGCAAAGGGTGTCTTTACCCGTTGGcc > 7:5847/1‑149 (MQ=255) aaCGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGATTGCAAAGGGTGTTGCAAAGGGTGTCTTTACCCGTTGGCCCGt > 3:295230/1‑149 (MQ=255) ggggTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGATTGCAAAGGGTGTTGCAAAGGGTGTCTTTACCCGTTGGCCCGTGCTg < 2:192389/149‑1 (MQ=255) gTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGAttgcaaagggtgtt < 4:285560/113‑1 (MQ=255) gTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGAttgcaaagggtgtt > 3:285560/1‑113 (MQ=255) cgtGCGGCTTACGCCGCACGGGGTGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAATGGGGGAAAAGCGGCGTGATTGCAAAGGGTGTTGCAAAGGGTGTCTTTACCCGTTGGCCCGTGCTGTTCTTTa > 2:187764/3‑149 (MQ=255) cgtGCGGCTTACGCCGCACGGGGTGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAATGGGGGAAAAGCGGCGTGATTGCAAAGGGTGTTGCAAAGGGTGTCTTTACCCGTTGGCCCGTGCTGTTCTTTa > 2:192412/3‑149 (MQ=255) ccggcggcgTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTATATGTCGCCTGAAGCCAAGGGGTGAAAAGCGGCGTGATTGCAAAGGGTGTTGCAAAGGGTGTCTTTACCCGTTGGCCCGTGCTGTTCTTTa < 5:212365/146‑1 (MQ=255) cTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGATTGCAAAGGGTGTTGCAAAGGGTGTCTTTACCCGTTGGCCCGTGCTGTTCTTTAt < 1:282036/149‑1 (MQ=255) cTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGATTGCAAAGGGTGTTGCAAAGGGTGTCTTTACCCGTTGGCCCGTGCTGTTCTTTAt > 6:201179/1‑149 (MQ=255) | GTGGCGGATCACCCCGAGCAATTCGTCGGTGGTGAAGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTA‑TGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGATTGCAAAGGGTGTTGCAAAGGGTGTCTTTACCCGTTGGCCCGTGCTGTTCTTTAT > NC_002947/1238957‑1239241 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |