| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,327,121 | C→T | 46.9% | intergenic (+97/‑196) | PP_16SE → / → PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,327,121 | 0 | C | T | 46.9% | 41.5 / 125.3 | 97 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base C (29/22); new base T (26/19); total (56/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.35e-03 | |||||||||||
GTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTA > NC_002947/1326976‑1327228 | gTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATc < 4:203985/149‑1 (MQ=32) tCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATc > 6:136425/1‑148 (MQ=17) gTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGaa < 1:160158/149‑1 (MQ=17) gTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGaa > 7:64815/1‑149 (MQ=32) tAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCGTGGTCAGAACCTGGAAATGAGCATTCGCATCGAAt > 7:124783/1‑149 (MQ=17) aCAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGt > 2:229793/1‑149 (MQ=17) aaGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGtt > 2:100863/1‑148 (MQ=32) gTAGGGGAACCTGCGGCTGGATCACCTCCTAAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATAGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATACGAACCCAAAGATGATATCTgga > 2:230509/1‑148 (MQ=11) gTAGGGGAACCTGCGGCTGGATCACCTCATTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGc > 1:183088/1‑149 (MQ=17) ggggAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCttt < 8:156078/149‑1 (MQ=32) ggggAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCatt > 8:296615/1‑149 (MQ=17) gggAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCtttt > 4:285052/1‑149 (MQ=17) gggAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCtttt > 5:52243/1‑149 (MQ=17) gggAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCtttt < 7:299333/149‑1 (MQ=32) aCCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCa < 5:247212/149‑1 (MQ=32) tGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGAt > 8:262421/1‑149 (MQ=32) cGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGAt < 8:64815/147‑1 (MQ=32) gCTGGATCACGTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑Gtt < 6:295741/149‑1 (MQ=17) tGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCt > 3:96393/1‑149 (MQ=17) ggATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCtt > 2:69380/1‑149 (MQ=32) taTCAACTCGTTAATCGCCGACATCAGCCTGCTGAAGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGATCCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCttt < 7:18886/148‑1 (MQ=11) gATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCtt > 5:291146/1‑148 (MQ=32) tCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCGTGGTCAGACCCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTCGCTTTTGTCAGATC‑GTTCTTTa > 6:207682/1‑148 (MQ=12) tCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTa < 5:55819/148‑1 (MQ=17) tCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTaa < 6:53157/149‑1 (MQ=32) aCCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTaaa > 3:278762/1‑148 (MQ=32) cctcctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTaaaaa > 6:30480/1‑149 (MQ=32) ctcctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGa < 8:155798/134‑1 (MQ=17) ctcctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGa > 7:155798/1‑134 (MQ=17) ctcctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTaaaa > 6:264969/1‑147 (MQ=17) ctcctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTaaaa < 5:264969/147‑1 (MQ=17) ctcctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAAt > 1:271375/1‑149 (MQ=17) ctcctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAAt > 7:6759/1‑149 (MQ=32) ctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGc > 6:212966/1‑121 (MQ=17) ctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGc < 5:212966/121‑1 (MQ=17) ctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCg > 8:195723/1‑149 (MQ=17) ctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCAAGTGTTTAAAAATTc > 1:272638/1‑149 (MQ=11) aaTCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTaaa > 4:85042/1‑140 (MQ=17) aaTCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTaaa < 3:85042/140‑1 (MQ=17) aTCGACGACATCAGCGTGCTGATGAGCTCGCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGATCATTCGTAGCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTTAAAATTCGGat < 1:230509/148‑1 (MQ=11) aTCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGata > 5:305510/1‑149 (MQ=32) gacgacATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATAtgt > 8:269769/1‑149 (MQ=17) gacgacATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATGTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCTGATAtgg > 4:173795/1‑148 (MQ=17) acgacATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATAtgt > 8:298384/1‑148 (MQ=32) gacATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTgat < 7:69757/149‑1 (MQ=32) acATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCATTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTgata < 7:296615/149‑1 (MQ=17) aTCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTga > 2:319342/1‑145 (MQ=17) aTCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATAtgt < 7:143414/143‑1 (MQ=32) aTCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATAtgt > 8:143414/1‑143 (MQ=32) tCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTgatagat < 1:229793/149‑1 (MQ=17) cAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGat > 7:135059/1‑137 (MQ=32) cAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGat < 8:135059/137‑1 (MQ=32) aGCCTGCTGATGAGCTCCCACACGTATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGatat < 1:184626/149‑1 (MQ=17) gCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGAtata < 5:136425/149‑1 (MQ=17) gCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGAtata < 8:6759/149‑1 (MQ=32) gCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGAtata < 5:30480/149‑1 (MQ=32) ccTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTgatagata > 5:319142/1‑146 (MQ=17) ctgctgATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGa > 4:219214/1‑149 (MQ=32) tgatgaGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTg > 6:60694/1‑148 (MQ=17) atgaGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGaa < 7:195723/148‑1 (MQ=17) tgaGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTc > 3:268843/1‑111 (MQ=32) tgaGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTc < 4:268843/111‑1 (MQ=32) tCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAAtt > 8:211679/1‑116 (MQ=17) tCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAAtt < 7:211679/116‑1 (MQ=17) tCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGt > 5:85423/1‑149 (MQ=32) ccACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGttt < 3:285052/149‑1 (MQ=17) ccACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGtt > 6:93829/1‑148 (MQ=32) ccACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGtt > 6:98373/1‑148 (MQ=32) ccACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATACGTGATAGATATAGACTGAACACCAGttt > 2:241057/1‑149 (MQ=17) cacaCGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGttt > 6:121062/1‑148 (MQ=32) cacaCGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTc < 5:98373/149‑1 (MQ=32) cacaCGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTc < 5:93829/149‑1 (MQ=32) acacGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTc > 4:47914/1‑93 (MQ=18) acacGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTc < 3:47914/93‑1 (MQ=18) cacGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCAc > 8:25441/1‑149 (MQ=17) acGAATTGCTTGATTCATTGTCGAAGACGTATTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCAc > 1:28622/1‑149 (MQ=12) gtatttgttGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCTGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATTGTGTGAACAACAGTTTCActgc < 6:31449/142‑1 (MQ=11) gAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCActgc > 1:31029/1‑149 (MQ=32) aTTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCActgctg < 8:106583/149‑1 (MQ=32) cTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCtggtg > 8:269219/1‑148 (MQ=32) tGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGAt > 8:165653/1‑149 (MQ=17) gATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCActgct > 1:267737/1‑141 (MQ=17) gATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCActgct < 2:267737/141‑1 (MQ=17) gATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGAt > 5:301458/1‑148 (MQ=17) cATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAgg < 6:291146/148‑1 (MQ=32) cATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGCGATAGATATAGACTGAaca < 6:61037/123‑1 (MQ=17) cATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGCGATAGATATAGACTGAaca > 5:61037/1‑123 (MQ=17) aTTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGc > 3:272340/1‑148 (MQ=17) ttGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCt > 3:290897/1‑148 (MQ=17) gTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTaa < 2:271375/148‑1 (MQ=17) tCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCTAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGttt < 6:257279/125‑1 (MQ=17) tCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGttt > 5:257279/1‑125 (MQ=17) gAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCa > 8:140489/1‑119 (MQ=11) gAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCa < 7:140489/119‑1 (MQ=11) gAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCa > 2:264224/1‑125 (MQ=11) gAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCa < 1:264224/125‑1 (MQ=11) gAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTa < 7:262421/149‑1 (MQ=11) | GTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGT‑TTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATC‑GTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTA > NC_002947/1326976‑1327228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |