Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,453,974 | C→G | 14.6% | A203G (GCC→GGC) | PP_1272 → | multidrug MFS transporter membrane fusion protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,453,974 | 0 | C | G | 14.6% | 104.4 / 10.5 | 41 | A203G (GCC→GGC) | PP_1272 | multidrug MFS transporter membrane fusion protein |
Reads supporting (aligned to +/- strand): ref base C (17/18); new base G (3/3); total (20/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 |
GAGCAGGGCGCGGGTACCGTGCAGAACGCCCAGCAGGCGCGCAGCGCTGTCGATCAAGCCCGTGCTCGCCTGGCCAACGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCT‑ACACCCGCATCACAGCGCCGGTGGACGGTATGGTCGGCGAACGCGCCCTGCGCGTGGGGGCCTACGTCAACCCGGGCGCTCGC > NC_002947/1453832‑1454116 | gAGCAGGGCGCGGGTACCGTGCAGAACGCCCAGCAGGCGCGCAGCGCTGTCGATCAAGCCCGTGCTCGCCTGGCCAACGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCATCGGCGCTgg > 8:187799/1‑149 (MQ=255) gCAGGGCGCGGGTACCGTGCAGAACGCCCAGCAGGCGCGCAGCGCTGTCGATCAAGCCCGTGCTCGCCTGGCCAACGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGcc < 1:137105/149‑1 (MQ=255) ggCGCGGGTACCGTGCAGAACGCCCAGCAGGCGCGCAGCGCTGTCGATCAAGCCCGTGCTCGCCTGGCCAACGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCATCGGCGCTGGCCactt < 7:187799/149‑4 (MQ=255) gcgGGTACCGTGCAGAACACCCAGCAGGCGCGCAGCGCTGTCGATCAAGCCCGTGCTCGCCTGGCCAACGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCATCGGCGCTGGCCacttgag < 4:224034/149‑7 (MQ=255) cGTGCAGAACGCCCAGCAGGCGCGCAGCGCTGTCGATCAAGCCCGTGCTCGCCTGGCCAACGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCATCGGCGCTGGCCact > 5:271300/1‑135 (MQ=255) cGTGCAGAACGCCCAGCAGGCGCGCAGCGCTGTCGATCAAGCCCGTGCTCGCCTGGCCAACGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCATCGGCGCTGGCCact < 6:271300/137‑3 (MQ=255) gCAGAACGCCCAGCAGGCGCGCAGCGCTGTCGATCAAGCCCGTGCTCGCCTGGCCAACGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAg > 1:191127/1‑149 (MQ=255) cgcgcAGCGCTGTCGATCAAGCCCGTGCTCGCCTGGCCAACGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGcc < 4:183389/149‑1 (MQ=255) cgcTGTCGATCAAGCCCGTGCTCGCCTGGCCAACGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTc > 2:20405/1‑148 (MQ=255) tCAAGCCCGTGCTCGCCTGGCCAACGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGAt < 3:108873/142‑1 (MQ=255) tCAAGCCCGTGCTCGCCTGGCCAACGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGAt > 4:108873/1‑142 (MQ=255) aGCCCGTGCTCGCCTGGCCAACGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGAt > 7:285330/1‑91 (MQ=255) aGCCCGTGCTCGCCTGGCCAACGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGAt < 8:285330/91‑1 (MQ=255) gCCCGTGCTCGCCTGGCCAACGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGt > 4:222345/1‑142 (MQ=255) gCCCGTGCTCGCCTGGCCAACGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGt < 3:222345/142‑1 (MQ=255) ccGTGCTCGCCTGGCCAACGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCT‑ACAccc < 8:136806/149‑1 (MQ=255) tCGCCTGGCCAACGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCT‑ACACCCGc < 1:312918/145‑1 (MQ=255) tCGCCTGGCCAACGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCT‑ACACCCGc > 2:312918/1‑145 (MQ=255) cAACGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGTCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCT‑ACAcc < 2:259091/133‑1 (MQ=255) cAACGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGTCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCT‑ACAcc > 1:259091/1‑133 (MQ=255) aaCGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCa < 6:188109/113‑1 (MQ=255) aaCGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCa > 5:188109/1‑113 (MQ=255) cgcgGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCT‑ACACCCGCATCACAGCGCCGGTGGACGGTATgg < 1:20405/147‑1 (MQ=255) cgcgGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCT‑ACACCCGCATCACAGCGCCGGTGGACGGTATGGt < 1:152943/148‑1 (MQ=255) gcgGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGG‑AAAGGCCCAGCTCGATCTGTCCT‑ACACCCGCATCACAGCGCCGGTGGACGGTATGGTCgg < 1:289768/149‑1 (MQ=255) ggcgCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAg > 5:198327/1‑91 (MQ=255) ggcgCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAg < 6:198327/91‑1 (MQ=255) gcgcgcAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCT‑ACACCCGCATCACAGCGCCGGTGGACGGTATGGTCGGCGAACgcgc > 4:16546/1‑149 (MQ=255) gcgcgcAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCT‑ACACCCGCATCACAGCGCCGGTGGACGGTATGGTCGGCGAACgcgc > 2:49435/1‑149 (MQ=255) gcgcAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCT‑ACACCCGCATCACAGCGCCGGTGGACGGTATGGTCGGCGAACGCGccc > 8:268006/1‑149 (MQ=255) gTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCT‑ACACCCGCATCACAGCGCCGGTGGACGGTATGGTCGGCGAACGCGCCCTGCGCGTggg < 8:77898/149‑1 (MQ=255) gACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCT‑ACACCCGCATca > 7:228806/1‑100 (MQ=255) gACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCT‑ACACCCGCATca < 8:228806/100‑1 (MQ=255) cTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCT‑ACACCCGCATCACAGCGCCGGTGGACGGTATGGTCGGCGAACGCGCCCTGCGCGTGGGGGCCTACGt < 7:268006/149‑1 (MQ=255) cACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCT‑ACACCCGCATCACAGCGCCGGTGGACGGTATGGTCGGCGAACGCGCCCTGCGCGTGGGGGCCTACGTc < 1:8153/148‑1 (MQ=255) cACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCT‑ACACCCGCATCACAGCGCCGGTGGACGGTATGGTCGGCGAACGCGCCCTGCGCGTGGGGGCCTACGTc > 2:8153/1‑148 (MQ=255) aCGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCT‑ACACCCGCATCACAGCGCCGGTGGACGGTATGGTCGGCGAACGCGCCCTGCGCGTGGGGGCCTACGTCaa > 7:203683/1‑149 (MQ=255) aaGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCT‑ACACCCGCATCACAGCGCCGGTGGACGGTATGGTCGGCGAACGCGCCCTGCGCGTGGGGGCCTACGTCAACCCgg < 8:203683/147‑1 (MQ=255) aaGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCT‑ACACCCGCATCACAGCGCCGGTGGACGGTATGGTCGGCGAACGCGCCCTGCGCGTGGGGGCCTACGTCAACCCGGgc > 8:277726/1‑149 (MQ=255) ctGGCCATCGGCGCTGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCT‑ACACCCGCATCACAGCGCCGGTGGACGGTATGGTCGGCGAACGCGCCCTGCGCGTGGGGGCCTACGTCAACCCGGgcgc > 5:130479/2‑149 (MQ=255) cAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCTGACACCCGCATCACAGCGCCGGTGGACGGTATGGTCGGCGAACGCGCCCTGCGCGTGGGGGCCTACGTCAACCCGGGCGCTCGc > 1:257658/1‑149 (MQ=255) | GAGCAGGGCGCGGGTACCGTGCAGAACGCCCAGCAGGCGCGCAGCGCTGTCGATCAAGCCCGTGCTCGCCTGGCCAACGCTCAAGCTGCGCGGGTGGCGGCGCGCAAGCAGGTGGACATCCTCACGGCTCAAGTGGCCAGCGCCGATGGCCAGCTCAAGCGTGCCGAAGCAGGCCTGGAAAAGGCCCAGCTCGATCTGTCCT‑ACACCCGCATCACAGCGCCGGTGGACGGTATGGTCGGCGAACGCGCCCTGCGCGTGGGGGCCTACGTCAACCCGGGCGCTCGC > NC_002947/1453832‑1454116 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |