Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,457,917 | T→G | 8.7% | V92V (GTT→GTG) | PP_1276 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,457,917 | 0 | T | G | 8.7% | 132.6 / 3.0 | 44 | V92V (GTT→GTG) | PP_1276 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (22/18); new base G (2/2); total (24/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTACGGGAGCGCCGAAAAATCAGCGTGGTTGTACGCGTACAAGGGGCAGGCCGAAGATGCGGACGTCTACATTGACTTCGATCTGGAACTACAGGAGGGCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATGACTGCCACAAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTG > NC_002947/1457773‑1458059 | cTACGGGAGCGCCGAAAAATCAGCGTGGTTGTACGCGTACAAGGGGCAGGCCGAAGATGCGGACGTCTACATTGACTTCGATCTGGAACTACAGGAGGGCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTcac > 4:86310/1‑148 (MQ=255) cTACGGGAGCGCCGAAAAATCAGCGTGGTTGTACGCGTACAAGGGGCAGGCCGAAGATGCGGACGTCTACATTGACTTCGATCTGGAACTACAGGAGGGCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTcac < 3:86310/148‑1 (MQ=255) gAGCGCCGAAAAATCAGCGTGGTTGTACGCGTACAAGGGGCAGGCCGAAGATGCGGACGTCTACATTGACTTCGATCTGGAACTACAGGAGGGCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGcgcg < 7:162886/149‑1 (MQ=255) gAGCGCCGAAAAATCAGCGTGGTTGTACGCGTACAAGGGGCAGGCCGAAGATGCGGACGTCTACATTGACTTCGATCTGGAACTACAGGAGGGCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTGAACAAgcgcc < 1:124067/149‑2 (MQ=255) gCGTGGTTGTACGCGTACAAGGGGCAGGCCGAAGATGCGGACGTCTACATTGACTTCGATCTGGAACTACAGGAGGGCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATggcgg < 6:282357/149‑1 (MQ=255) gTACGCGTACAAGGGGCAGGCCGAAGATGCGGACGTCTACATTGACTTCGATCTGGAACTACAGGAGGGCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCg < 5:113459/148‑1 (MQ=255) tACGCGTACAAGGGGCAGGCCGAAGATGCGGACGTCTACATTGACTTCGATCTGGAACTACAGGAGGGCGTGCGGGATGTCGTCATCGGGTGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGa < 7:48602/148‑1 (MQ=255) gcgTACAAGGGGCAGGCCGAAGATGCGGACGTCTACATTGACTTCGATCTGGAACTACAGGAGGGCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATc > 8:278486/1‑149 (MQ=255) gcgTACAAGGGGCAGGCCGAAGATGCGGACGTCTACATTGACTTCGATCTGGAACTACAGGAGGGCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATc > 3:228144/1‑149 (MQ=255) cAAGGGGCAGGCCGAAGATGCGGACGTCTACATTGACTTCGATCTGGAACTACAGGAGGGCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCggg < 7:48052/148‑1 (MQ=255) ggCAGGCCGAAGATGCGGACGTCTACATTGACTTCGATCCGGAACTACAGGAGGGCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATc < 3:227915/149‑1 (MQ=255) gCCGAAGATGCGGACGTCTACATTGACTTCGATCTGGAACTACAGGAGGGCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTcac < 1:9090/99‑1 (MQ=255) gCCGAAGATGCGGACGTCTACATTGACTTCGATCTGGAACTACAGGAGGGCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTcac > 2:9090/1‑99 (MQ=255) gAAGATGCGGACGTCTACATTGACTTCGATCTGGAACTACAGGAGGGCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACt > 1:177989/1‑149 (MQ=255) aGATGCGGACGTCTACATTGACTTCGATCTGGAACTACAGGAGGGCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGc < 4:236507/123‑1 (MQ=255) aGATGCGGACGTCTACATTGACTTCGATCTGGAACTACAGGAGGGCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGc > 3:236507/1‑123 (MQ=255) tGCGGACGTCTACATTGACTTCGATCTGGAACTACAGGAGGGCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGaa < 4:228144/148‑1 (MQ=255) cGGACGTCTACATTGACTTCGATCTGGAACTACAGGAGGGCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAAt < 1:151155/148‑1 (MQ=255) tACATTGACTTCGATCTGGAACTACAGGAGGGCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATACGGGCGTATCCGGAAACTCGAAATGACTGCca > 5:126062/1‑148 (MQ=255) gAACTACAGGAGGGCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATGACTGCCACAAGCATCAggacctgga > 3:126832/1‑141 (MQ=255) cAGGAGGGCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATGACTACCACAAGCATCAGGGCTGAATCCTTCg > 1:651/1‑148 (MQ=255) ggCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATGACTGCCACAAGCATCAGGGCTGAATCCTTCGAATTTg < 7:278486/148‑1 (MQ=255) cGTGCGGGATGTTGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATGACTGCCACAAGCATCAGGGCTGAATCCTTc > 4:223587/1‑139 (MQ=255) cGTGCGGGATGTTGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATGACTGCCACAAGCATCAGGGCTGAATCCTTc < 3:223587/139‑1 (MQ=255) ggATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTc > 4:89131/1‑97 (MQ=255) ggATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTc < 3:89131/97‑1 (MQ=255) tcgtcATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATGACTGCCACAAGCATCAGGGCTGAATcc > 5:23677/1‑125 (MQ=255) tcgtcATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATGACTGCCACAAGCATCAGGGCTGAATcc < 6:23677/125‑1 (MQ=255) cgtcATCGGGGGTGAGGCGAACCGCGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATGACTGCCACAAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGAtt > 1:254650/1‑149 (MQ=255) tcATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATGACTGCCACAAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTg > 7:286344/1‑149 (MQ=255) aTCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATGACTGCCACAAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCa < 2:177989/149‑1 (MQ=255) tCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATGACTGCCACAAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAg > 8:3718/1‑149 (MQ=255) ggggTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATGACTGCCACAAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGa > 2:261819/1‑149 (MQ=255) gCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATCACTGCCACAAGCATCAGGCCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTGTCAg > 4:270402/1‑149 (MQ=255) cGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATGACTGCCACAAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAgg > 6:172719/1‑149 (MQ=255) gggCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATGACTGCCACAAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGgtggtg > 1:130370/1‑149 (MQ=255) ccgcgcTTGTGAACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATGACTGCCACAAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGgtggtg > 4:182697/3‑149 (MQ=255) ggCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATGACTGCCACAAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGtggtgg < 7:3718/149‑1 (MQ=255) gcgcTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATGACTGCCACAAGCATCAGGGCTGAATCCTTCGAATTTGATGGGGAGGATGATTTGCAGCGACCTTTCAGGGTggtggg > 3:75946/1‑149 (MQ=255) gcgcTTGTGAACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATGACTGCCACAAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTggtggg > 4:190314/1‑149 (MQ=255) gcTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCg > 7:92790/1‑65 (MQ=255) gcTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCg < 8:92790/65‑1 (MQ=255) gcTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATGACTGCCACAAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTggtgggtg > 7:9940/1‑149 (MQ=255) gcTTGTGAACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATGACTGCCACAAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTggtgggtg < 3:190314/149‑1 (MQ=255) | CTACGGGAGCGCCGAAAAATCAGCGTGGTTGTACGCGTACAAGGGGCAGGCCGAAGATGCGGACGTCTACATTGACTTCGATCTGGAACTACAGGAGGGCGTGCGGGATGTCGTCATCGGGGGTGAGGCGAACCGGGCGCTTGTTCACAAGCGCGGCACAACCTATGGCGGCTATGCGAAATCCGGGCGTATCCGGAAACTCGAAATGACTGCCACAAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTG > NC_002947/1457773‑1458059 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |