Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,717,710 | G→A | 7.8% | A137T (GCG→ACG) | rsmJ → | ribosomal RNA small subunit methyltransferase J |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,717,710 | 0 | G | A | 7.8% | 147.8 / 2.4 | 51 | A137T (GCG→ACG) | rsmJ | ribosomal RNA small subunit methyltransferase J |
Reads supporting (aligned to +/- strand): ref base G (25/22); new base A (2/2); total (27/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.72e-01 |
GGCATTGCCCAAGGTATCCGGCCGCAGGTACTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATGTTTCCACACCGCGACAAGA > NC_002947/1717566‑1717857 | ggCATTGCCCAAGGTATCCGGCCGCAGGTACTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTggcgc < 4:129309/148‑1 (MQ=255) gCATTGCCCAAGGTATCCGGCCGCAGGTACTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTggcgcgg < 6:244863/149‑1 (MQ=255) aTTGCCCAAGGTATCCGGCCGCAGGTACTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTggcgcgggc > 7:302911/1‑149 (MQ=255) cccAAGGTATCCGGCCGCAGGTACTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGa < 8:250707/149‑1 (MQ=255) cccAAGGTATCCGGCCGCAGGTACTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGa < 7:249912/149‑1 (MQ=255) ccAAGGTATCCGGCCGCAGGTACTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAg > 8:193206/1‑149 (MQ=255) cAAGGTATCCGGCCGCAGGTACTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGc < 2:292335/149‑1 (MQ=255) tCCGGCCGCAGGTACTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATg > 6:53602/1‑147 (MQ=255) gCCGCAGGTACTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGaagaag > 4:204754/1‑149 (MQ=255) ggTACTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGcc > 1:297762/1‑149 (MQ=255) cTGGATGCCACGGCGGGGCTGGGCAAGGACGGGTTGGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGTTCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCTAGCGGATGAAGAAGTGGGCCCGAt < 1:118800/149‑1 (MQ=255) cTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGa < 4:178098/148‑1 (MQ=255) ggATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTg > 7:217671/1‑149 (MQ=255) aTGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTc < 7:193206/149‑1 (MQ=255) aCGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGgc > 2:261314/1‑148 (MQ=255) tGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCctg < 2:297762/149‑1 (MQ=255) ggCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCctgct > 5:217203/1‑149 (MQ=255) aaGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGAc > 2:224327/1‑149 (MQ=255) gACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCgg > 1:60046/1‑149 (MQ=255) gTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACg > 4:296874/1‑149 (MQ=255) gTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGACGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACg > 4:6602/1‑149 (MQ=255) gTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGACGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACg > 4:2093/1‑149 (MQ=255) gTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCAt > 1:115320/1‑149 (MQ=255) gCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATc > 5:159020/1‑148 (MQ=255) cTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATc > 3:103204/1‑147 (MQ=255) cTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATc > 4:306457/1‑147 (MQ=255) gCCAGCCTTGGCTGCCAGATGACCCTGAACGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGACGACGCCCTGGCCCGGGCGCGAGCGCATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAgcg > 7:89758/1‑149 (MQ=255) ccAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGACGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAgcgc < 3:6602/149‑1 (MQ=255) ccAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGACGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAgcgc < 3:2093/149‑1 (MQ=255) cAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCctg < 2:8686/124‑1 (MQ=255) cAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCctg > 1:8686/1‑124 (MQ=255) cAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCa > 3:6239/1‑149 (MQ=255) ggCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATgcgcg < 6:159020/148‑1 (MQ=255) gCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATgcgcgc < 3:306457/148‑1 (MQ=255) ccAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTgg > 6:86708/1‑148 (MQ=255) aCCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAggg > 1:113696/1‑147 (MQ=255) aCCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAggg < 2:113696/147‑1 (MQ=255) aCCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGa < 8:302911/149‑1 (MQ=255) aCCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGa < 3:296874/149‑1 (MQ=255) ccTGATCGAGCGCCAGTCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAgg > 5:156948/1‑149 (MQ=255) ccTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAgg > 6:151524/1‑149 (MQ=255) ccTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAgg < 4:6239/149‑1 (MQ=255) tGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGgcg > 8:129726/1‑149 (MQ=255) gcgcCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAgg < 5:36299/149‑1 (MQ=255) cGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATc > 8:155166/1‑104 (MQ=255) cGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATc < 7:155166/104‑1 (MQ=255) cGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTAc < 2:115320/149‑1 (MQ=255) ttGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACTCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGAc < 5:53602/149‑1 (MQ=255) gcgcTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGAt < 7:129726/149‑1 (MQ=255) gcgcTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGAt < 3:204754/149‑1 (MQ=255) gctgctGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATGt < 6:156948/149‑1 (MQ=255) gaCGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATGTTTCCACACcg > 4:292529/1‑149 (MQ=255) aCGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATGTTTCCACACcgc > 6:24491/1‑149 (MQ=255) ggCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATGTTTCCACACCGCGa < 6:217203/149‑1 (MQ=255) ggcgcgggcgcgAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATGTTTCCACACCGCGACAaga < 5:151524/149‑1 (MQ=255) | GGCATTGCCCAAGGTATCCGGCCGCAGGTACTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATGTTTCCACACCGCGACAAGA > NC_002947/1717566‑1717857 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |