Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,902,227 | C→G | 17.1% | R926R (CGC→CGG) ‡ | PP_1703 → | assimilatory nitrate reductase/sulfite reductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,902,227 | 0 | C | G | 17.1% | 111.3 / 13.9 | 46 | R926R (CGC→CGG) ‡ | PP_1703 | assimilatory nitrate reductase/sulfite reductase |
Reads supporting (aligned to +/- strand): ref base C (19/19); new base G (3/5); total (22/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.02e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01 |
CCGACAGCGGCGCGGCCTTCTGGCAGGCTTTGCAGGGCGAGGAGGGCGCTCACTGCGCCGGGCTGCCCTATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCG‑AAGCGTTATTGCCTGCACTGGGCACTGCCGCGGCGCCATCTCCGGCGAGTGAACC > NC_002947/1902088‑1902364 | ccGACAGCGGCGCGGCCTTCTGGCAGGCTTTGCAGGGCGAGGAGGGCGCTCACTGCGCCGGGCTGCCCTATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGGCCAGGCGCTGGTCGAg > 5:32938/1‑149 (MQ=255) cGACAGCGGCGCGGCCTTCTGGCAGGCTTTGCAGGGCGAGGAGGGCGCTCACTGCGCCGGGCTGCCCTATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGGCCAGGCGCTGGTCGAGc < 5:320917/149‑1 (MQ=255) aCAGCGGCGCGGCCTTCTGGCAGGCTTTGCAGGGCGAGGAGGGCGCTCACTGCGCCGGGCTGCCCTATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGGCCAGGCGCTGGTCGAGCtt < 6:32938/149‑2 (MQ=255) ggcgcggcCTTCTGGCAGGCTTTGCAGGGCGAGGAGGGCGCTCACTTCGCCGGGCTGCCCTATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCTCAAGCTCGACCAGCGGCTGGCCGATCTGGGAgg < 8:284324/149‑1 (MQ=255) ttCTGGCAGGCTTTGCAGGGCGAGGAGGGCGCTCACTGCGCCGGGCTGCCCTATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGGCCAGGCGCTGGTCGAGCttgcg < 4:7683/138‑5 (MQ=255) ttCTGGCAGGCTTTGCAGGGCGAGGAGGGCGCTCACTGCGCCGGGCTGCCCTATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGGCCAGGCGCTGGTCGAGCttgcg > 3:7683/1‑134 (MQ=255) gCAGGCTTTGCAGGGCGAGGAGGGCGCTCACTGCGCCGGGCTGCCCTATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCctgctg < 4:303734/148‑1 (MQ=255) gCAGGCTTTGCAGGGCGAGGAGGGCGCTCACTGCGCCGGGCTGCCCTATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTgg > 1:168819/1‑149 (MQ=255) gCAGGCTTTGCAGGGCGAGGAGGGCGCTCACTGCGCCGGGCTGCCCTATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTgg > 3:138499/1‑149 (MQ=255) cTTTGCAGGGCGAGGAGGGCGCTCACTGCGCCGGGCTGCCCTATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCgg < 2:168819/149‑1 (MQ=255) cAGGGCGAGGAGGGCGCTCACTGCGCCGGGCTGCCCTATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGa < 6:194915/149‑1 (MQ=255) gCGAGGAGGGCGCTCACTGCGCCGGGCTGCCCTATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGc < 1:96026/149‑1 (MQ=255) aggGCGCTCACTGCGCCGGGCTGCCCTATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGccc < 2:225456/149‑1 (MQ=255) aggGCGCTCACTGCGCCGGGCTGCCCTATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGccc < 4:138499/149‑1 (MQ=255) cTCACTGCGCCGGGCTGCCCTATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTc < 8:55935/149‑1 (MQ=255) cTCACTGCGCCGGGCTGCCCTATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTc > 8:102305/1‑149 (MQ=255) cTGCCCTATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTgc > 6:320373/1‑149 (MQ=255) ccTATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTgctggc > 3:2701/1‑149 (MQ=255) cTATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTgctggct > 4:112591/1‑149 (MQ=255) cTATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTgctggct < 3:112591/149‑1 (MQ=255) tATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCAAGCCCGACTTCGACGAAGCCTTTgctggctg > 5:92775/1‑149 (MQ=255) tGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTgctggctg < 1:8789/147‑1 (MQ=255) tGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCtggctggc > 7:223065/1‑149 (MQ=255) ccGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTc > 4:18584/1‑149 (MQ=255) cGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTc > 7:197317/1‑148 (MQ=255) tACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCG‑aa < 5:320373/149‑1 (MQ=255) tGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCG‑AAGCg > 7:177660/1‑149 (MQ=255) cTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCG‑AAGCGTTAtt < 4:2701/149‑1 (MQ=255) ggCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCG‑AAGCGTTATTGcc > 2:11630/1‑149 (MQ=255) aGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCG‑AAGCGTTATTGCCTGCACTggg < 3:18584/149‑1 (MQ=255) ttACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCG‑AAGCGTTATTGCCTGCACTGGGc > 1:45167/1‑148 (MQ=255) gACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCG‑AAGCGTTATTGCCTGCACTGGGCACTGc < 7:102305/149‑1 (MQ=255) ccAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGCGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCG‑AAGCGTTATTGCCTGCACTGGGCACTGCcg > 4:221009/1‑149 (MQ=255) tCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCG‑AAGCGTTATTGCCTGCACTGGGCACTGCCgcggc < 8:177660/148‑1 (MQ=255) cGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCG‑AAGCGTTATTGCCTGCACTGGGCACTGCCGCGgcgc < 8:197317/146‑1 (MQ=255) ggTTTTGGCCGCAAGCTCGACCAGCGCCTGGCGGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCG‑AAGCGTTATTGCCTGCACTGGGCACTGCCGCGGCGCCAtc < 8:223065/149‑1 (MQ=255) ggTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCAAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCG‑AAGCGTTATTGCCTGCACTGGGCACTGCCGCGGCGCCAtc < 6:92775/149‑1 (MQ=255) tttGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCG‑AAGCGTTATTGCCTGCACTGGGCACTGCCGCGGCGCCATCTcc > 2:144211/1‑149 (MQ=255) ctcccaGCTCGGCCAGGCGCTGGTCGAGCTTTGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCGCAAGCGTTATTGCCTGCACTGGGCACTGCCgcggc < 1:205708/131‑1 (MQ=255) ctcccaGCTCGGCCAGGCGCTGGTCGAGCTTGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCG‑AAGCGTTATTGCCTGCACTGGGCACTGCCgcggc > 2:205708/6‑135 (MQ=255) ccGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCG‑AAGCGTTATTGCCTGCACTGGGCACTGCCGCGGCGCCATCTCCGGc > 3:105606/1‑147 (MQ=255) cTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCG‑AAGCGTTATTGCCTGCACTGGGCACTGCCGCGGCGCCATCTCCGGCGAGTGAAcc > 2:27341/1‑149 (MQ=255) tCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCG‑AAGCGTTATTGCCTGCACTGGGCACTGCCGCGGCGCCAtctc < 6:204121/135‑1 (MQ=255) tCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCG‑AAGCGTTATTGCCTGCACTGGGCACTGCCGCGGCGCCAtctc > 5:204121/1‑135 (MQ=255) cAGCGCCTAGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCG‑AAGCGTTATTGCCTGCACTGGGCACTGCCgcggc < 6:223226/122‑1 (MQ=255) cAGCGCCTAGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCG‑AAGCGTTATTGCCTGCACTGGGCACTGCCgcggc > 5:223226/1‑122 (MQ=255) | CCGACAGCGGCGCGGCCTTCTGGCAGGCTTTGCAGGGCGAGGAGGGCGCTCACTGCGCCGGGCTGCCCTATGCCGTACTGGCCCTGGGCGACTCCAGTTACGACCAGTTCTGCGGTTTTGGCCGCAAGCTCGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCG‑AAGCGTTATTGCCTGCACTGGGCACTGCCGCGGCGCCATCTCCGGCGAGTGAACC > NC_002947/1902088‑1902364 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |