| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 196,351 | C→G | 23.3% | T619T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 196,351 | 0 | C | G | 23.3% | 206.4 / 61.2 | 115 | T619T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (47/41); new base G (14/13); total (61/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 115 total aligned reads displayed.
ACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCC > NC_002947/196205‑196497 | aCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCAGTCGCTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTCACAGTGACCCTGTCCAAAGGCCAAACCa > 1:246305/1‑149 (MQ=11)aCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCa > 3:42291/1‑148 (MQ=39) tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt < 3:126245/149‑1 (MQ=39) tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt > 1:41027/1‑149 (MQ=39) aaCGACTCGGTCGACAGCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGa < 8:279433/149‑1 (MQ=255) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAtt < 1:213905/140‑1 (MQ=40) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAtt > 2:213905/1‑140 (MQ=40) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTg > 7:166085/1‑147 (MQ=39) gACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGc < 2:41027/149‑1 (MQ=39) gACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGc > 5:269162/1‑149 (MQ=39) gACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGc < 4:200266/149‑1 (MQ=21) gtCGTTCGACACCAGTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTTATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCg < 8:234658/148‑1 (MQ=255) cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGt < 4:9712/141‑1 (MQ=39) cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGt > 3:9712/1‑141 (MQ=39) cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCAC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAt > 8:22246/1‑135 (MQ=255) acacCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAcc < 5:136057/149‑1 (MQ=21) acacCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAAcc > 6:112637/1‑149 (MQ=39) accacTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAAcccc > 4:88439/1‑148 (MQ=38) accacTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAAcc > 2:242446/1‑147 (MQ=38) ccacTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑g > 7:283470/1‑149 (MQ=37) cacTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCA‑gg < 1:322975/149‑1 (MQ=17) cacTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑gg > 1:78945/1‑149 (MQ=37) accaCCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑ggg > 4:206631/4‑149 (MQ=0) acTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑ggg > 5:6838/1‑149 (MQ=37) tACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCA‑ggg > 5:270783/1‑147 (MQ=11) ccGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGc > 3:95988/1‑149 (MQ=34) ccGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGc < 2:91691/149‑1 (MQ=12) cgcgACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAGCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg > 1:262696/1‑132 (MQ=17) cgcgACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg < 2:262696/132‑1 (MQ=32) gcgACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGt > 2:256612/1‑149 (MQ=34) cgACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTc < 1:297487/149‑1 (MQ=12) ccTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGact > 2:209826/1‑147 (MQ=12) cTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCa > 2:303200/1‑139 (MQ=34) tGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt < 1:119964/116‑1 (MQ=32) tGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt > 2:119964/1‑116 (MQ=32) gACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTc > 6:289081/1‑148 (MQ=255) aCGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTc < 4:95988/147‑1 (MQ=34) aCGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTc < 5:96753/147‑1 (MQ=34) aGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGAcccc > 5:283881/1‑149 (MQ=34) ccc‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCgg < 8:283470/149‑1 (MQ=34) ggTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATg < 5:289081/149‑1 (MQ=255) gTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGa > 5:222263/1‑149 (MQ=255) tCACCGAATGCGGCGTGATCACTTACACCGTGACCGTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc < 4:54828/149‑1 (MQ=21) tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc < 3:206631/149‑1 (MQ=255) tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc > 5:161494/1‑149 (MQ=255) aCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGt < 4:277855/149‑1 (MQ=255) aCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGt > 2:220428/1‑149 (MQ=255) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc > 2:176905/1‑148 (MQ=34) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc > 2:181911/1‑148 (MQ=34) gAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa < 3:163607/149‑1 (MQ=34) aaGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTac < 1:256612/149‑1 (MQ=34) ggcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTAcaacaa > 7:242027/1‑149 (MQ=34) cgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACg < 6:283881/149‑1 (MQ=34) gATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACggat > 5:265671/1‑147 (MQ=21) gATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 3:301128/1‑149 (MQ=34) aTCACTTACACCGTTACCCTGAGCAACCCTGCCCAGACGCCTGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 8:291164/148‑1 (MQ=11) aTCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAACCTGTCCAACGGCCAAACCATTACCGTTGAAGCCTGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGTCGAATGACGTCTACAACAACGGtt < 3:204761/148‑1 (MQ=255) aTCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc > 6:201017/1‑149 (MQ=255) tCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCg < 1:311141/149‑1 (MQ=255) tCACATACACCGTGACCCTCAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCAAACGGCCAAACCAATACCGATGAAGCCGGCAAAACACA‑GGGCAGCGTCGATTTCAAGACCCCGGCGAATGACATCTACAACAACCGtac > 2:306075/1‑146 (MQ=11) aCTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGTAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 6:6838/148‑1 (MQ=21) aCTTACAACGTGACCCTGACCAATCCTGCCCAGACGCCGGGGACAGTTAACCTGTCCAAAGGCCAAAACATTACCGTTGAAGCCGGCAAAACCCAGGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 1:242446/149‑1 (MQ=11) acacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt > 7:293950/1‑148 (MQ=255) acacCGTGACCATGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAc < 5:268004/145‑1 (MQ=17) acCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc > 1:143952/1‑140 (MQ=255) acCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 2:143952/140‑1 (MQ=255) ccGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgt < 6:265671/149‑1 (MQ=35) gTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc < 5:192706/123‑1 (MQ=32) gTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc > 6:192706/1‑123 (MQ=32) cccTGAGCAATCCTGCCTAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAAACATTACCGTTGAAGCCGGCAAAACCCA‑GGGCATCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCTGTGTCAcc < 7:113418/149‑1 (MQ=255) cccTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCAcc < 1:209826/149‑1 (MQ=11) ccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCa > 7:107199/1‑149 (MQ=37) ccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACACTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCa > 3:298777/1‑149 (MQ=37) tCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACg > 6:87200/1‑149 (MQ=37) tGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgtgt < 1:322850/132‑1 (MQ=37) tGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgtgt > 2:322850/1‑132 (MQ=37) cAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTc > 2:79026/1‑102 (MQ=255) cAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcgg < 4:143592/149‑1 (MQ=39) aGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggc > 5:272752/1‑149 (MQ=39) aCGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcgg > 7:3494/1‑149 (MQ=39) cGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATc < 4:97481/128‑1 (MQ=38) ggTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAg < 7:3530/117‑1 (MQ=255) ggTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAg > 8:3530/1‑117 (MQ=255) gTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAAttt < 8:107199/149‑1 (MQ=39) gTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAACCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGGTCGACTGTCAGTGTCACCATAGAGAACGACACCCGCGGTAAttt > 6:195105/1‑149 (MQ=14) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa > 2:276096/1‑104 (MQ=32) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 1:276096/104‑1 (MQ=32) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg > 4:208233/1‑148 (MQ=38) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg > 2:175501/1‑148 (MQ=38) aCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAAc < 1:181911/148‑1 (MQ=37) aCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAAc < 1:176905/148‑1 (MQ=37) aCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACt < 3:208233/149‑1 (MQ=37) cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAc > 5:216461/1‑149 (MQ=37) gTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCg < 7:447/113‑1 (MQ=35) cGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATc < 2:78945/149‑1 (MQ=38) ggCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACGGTCAGTGTCCCCATCGAGAACGCCACCGGCGGTAATTTCGAGCACCTGCCCCCGAATcc > 6:247055/1‑149 (MQ=255) aaaCGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTc > 4:64715/1‑47 (MQ=255) aaCCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGAtt > 1:268758/1‑44 (MQ=38) aaCCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGc < 1:175501/149‑1 (MQ=39) aCCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGcc > 1:307099/1‑149 (MQ=39) | ACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCC > NC_002947/196205‑196497 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |