| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 196,390 | T→C | 26.1% | D632D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 196,390 | 0 | T | C | 26.1% | 130.2 / 52.9 | 89 | D632D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (32/33); new base C (12/11); total (45/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.48e-01 | |||||||||||
GACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCA > NC_002947/196246‑196532 | gACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTc > 6:289081/1‑148 (MQ=255) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTc < 5:96753/147‑1 (MQ=34) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTc < 4:95988/147‑1 (MQ=34) aGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGAcccc > 5:283881/1‑149 (MQ=34) cccGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCgg < 8:283470/149‑1 (MQ=34) ccagTCGGTCACCGAAGGCGGCCTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCgg > 2:311141/4‑149 (MQ=11) ggTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATg < 5:289081/149‑1 (MQ=255) gTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGa > 5:222263/1‑149 (MQ=255) tCACCGAATGCGGCGTGATCACTTACACCGTGACCGTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc < 4:54828/149‑1 (MQ=21) tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc < 3:206631/149‑1 (MQ=255) tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc > 5:161494/1‑149 (MQ=255) aCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGt < 4:277855/149‑1 (MQ=255) aCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGt < 5:268735/149‑1 (MQ=255) aCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGt > 2:220428/1‑149 (MQ=255) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc > 2:176905/1‑148 (MQ=34) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc > 2:181911/1‑148 (MQ=34) cGAAGGCGGCGTGATCACTTACACCGTGACCCTCAGCAACCCTTACCAGACGCCTGTCACCTTGACCCTGTCCAACCGCCAAACCATAACCCTAGAAGCCGTCAAAACCCA‑GGCCAGCGTCGACTTAAAGACACCCGACAAAGACGTc > 2:219304/1‑148 (MQ=2) gAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa < 3:163607/149‑1 (MQ=34) aaGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTac < 1:256612/149‑1 (MQ=34) ggcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTAcaacaa > 7:242027/1‑149 (MQ=34) cgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACg < 6:283881/149‑1 (MQ=34) gATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACggat > 5:265671/1‑147 (MQ=21) gATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 3:143592/1‑149 (MQ=34) gATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 3:301128/1‑149 (MQ=34) aTCACTTACACCGTTACCCTGAGCAACCCTGCCCAGACGCCTGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 8:291164/148‑1 (MQ=11) aTCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAACCTGTCCAACGGCCAAACCATTACCGTTGAAGCCTGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGTCGAATGACGTCTACAACAACGGtt < 3:204761/148‑1 (MQ=255) aTCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 1:219304/148‑1 (MQ=255) aTCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc > 6:201017/1‑149 (MQ=255) tCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCg < 1:311141/149‑1 (MQ=255) tCACATACACCGTGACCCTCAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCAAACGGCCAAACCAATACCGATGAAGCCGGCAAAACACA‑GGGCAGCGTCGATTTCAAGACCCCGGCGAATGACATCTACAACAACCGtac > 2:306075/1‑146 (MQ=11) aCTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGTAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 6:6838/148‑1 (MQ=21) aCTTACAACGTGACCCTGACCAATCCTGCCCAGACGCCGGGGACAGTTAACCTGTCCAAAGGCCAAAACATTACCGTTGAAGCCGGCAAAACCCAGGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 1:242446/149‑1 (MQ=11) ttACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACTGCCAAACCATTACCGTTGAATCCGGCAAAACCCA‑GGGCAGCGTAGATTTCCAGACACCGGCGAATGACCTCTACAACAACGGTACGAc > 6:268004/1‑147 (MQ=11) acacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt > 7:293950/1‑148 (MQ=255) acacCGTGACCATGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAc < 5:268004/145‑1 (MQ=17) cacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt > 6:107739/1‑147 (MQ=255) acCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc > 1:143952/1‑140 (MQ=255) acCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 2:143952/140‑1 (MQ=255) ccGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgt < 6:265671/149‑1 (MQ=35) gTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc > 6:192706/1‑123 (MQ=32) gTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc < 5:192706/123‑1 (MQ=32) gTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgtgt < 5:112637/149‑1 (MQ=37) cccTGAGCAATCCTGCCTAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAAACATTACCGTTGAAGCCGGCAAAACCCA‑GGGCATCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCTGTGTCAcc < 7:113418/149‑1 (MQ=255) cccTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCAcc < 1:209826/149‑1 (MQ=11) ccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCa > 7:107199/1‑149 (MQ=37) ccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACACTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCa > 3:298777/1‑149 (MQ=37) tCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACg > 6:87200/1‑149 (MQ=37) tGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgtgt < 1:322850/132‑1 (MQ=37) tGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgtgt > 2:322850/1‑132 (MQ=37) cAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTc > 2:79026/1‑102 (MQ=255) cAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTc < 1:79026/102‑1 (MQ=255) cAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcgg < 4:143592/149‑1 (MQ=39) aGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggc > 5:272752/1‑149 (MQ=39) aCGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcgg > 7:3494/1‑149 (MQ=39) cGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATc < 4:97481/128‑1 (MQ=38) ggTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAg < 7:3530/117‑1 (MQ=255) ggTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAg > 8:3530/1‑117 (MQ=255) gTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAAttt < 8:107199/149‑1 (MQ=39) gTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAACCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGGTCGACTGTCAGTGTCACCATAGAGAACGACACCCGCGGTAAttt > 6:195105/1‑149 (MQ=14) tGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTc < 3:88439/149‑1 (MQ=39) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 1:276096/104‑1 (MQ=32) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa > 2:276096/1‑104 (MQ=32) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg > 2:175501/1‑148 (MQ=38) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg > 4:208233/1‑148 (MQ=38) aCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAAc < 1:181911/148‑1 (MQ=37) aCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAAc < 1:176905/148‑1 (MQ=37) aCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACt < 3:208233/149‑1 (MQ=37) cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAc > 5:216461/1‑149 (MQ=37) gTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCg > 8:447/1‑113 (MQ=35) gTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCg < 7:447/113‑1 (MQ=35) tCCAAAGGCCAAACCTTTACGGTTGAAGCCGGCAAATCCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACTACGGTTCGACTGTCAGTGTCAACATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAccc < 4:301128/148‑1 (MQ=11) cGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATc < 2:78945/149‑1 (MQ=38) ggCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACGGTCAGTGTCCCCATCGAGAACGCCACCGGCGGTAATTTCGAGCACCTGCCCCCGAATcc > 6:247055/1‑149 (MQ=255) aaaCGATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTc > 4:64715/1‑47 (MQ=255) aaCCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGAtt > 1:268758/1‑44 (MQ=38) aaCCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGc < 1:175501/149‑1 (MQ=39) aCCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGcc > 1:307099/1‑149 (MQ=39) ccGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGa < 2:94726/42‑1 (MQ=35) ccGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGa > 1:94726/1‑42 (MQ=35) ccGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 7:280815/72‑1 (MQ=34) ccGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCAcggac > 1:268495/1‑103 (MQ=25) ccGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggc < 2:268495/107‑1 (MQ=40) ccGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAg < 5:87200/149‑1 (MQ=39) ccGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGAATTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 8:280815/1‑72 (MQ=21) tGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGACTACAACACCGGTTCGCCTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCCACGGACCCCGAATCCGACGCCGGCTCAGACCa > 5:289937/1‑149 (MQ=14) ccA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCgg > 1:130335/1‑149 (MQ=39) cA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGt > 4:200148/1‑149 (MQ=39) gCAGCGTCGATTTCCAGACCCAGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTTTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGAt < 6:272752/149‑1 (MQ=255) cGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGcca > 5:291059/1‑149 (MQ=39) cGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGcca > 3:127094/1‑149 (MQ=39) | GACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCA > NC_002947/196246‑196532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |