| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,179 | A→G | 6.2% | V895V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,179 | 0 | A | G | 6.2% | 425.6 / 12.2 | 144 | V895V (GTA→GTG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base A (67/68); new base G (5/4); total (72/72) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
Only 100 of 146 total aligned reads displayed.
GTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGG > NC_002947/197033‑197325 | gTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACAACCGCGACCCTGACGGCGAGCCCGTCGGTCACAGAAGGCGTCGTAAt > 7:272060/1‑149 (MQ=255) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATc < 5:99354/149‑1 (MQ=255) cgatctaCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAc < 7:120901/143‑1 (MQ=255) aGCGTCACCATCGAGAAGGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAc < 5:113331/149‑1 (MQ=255) aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAc < 6:234001/149‑1 (MQ=21) aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAc < 1:215099/149‑1 (MQ=39) aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCa < 8:264608/148‑1 (MQ=255) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAcc > 3:174956/1‑149 (MQ=38) cGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCt < 6:259620/149‑1 (MQ=38) cGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAcc > 3:296532/1‑148 (MQ=38) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTacac < 1:106973/149‑1 (MQ=37) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAc > 8:120901/1‑142 (MQ=37) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGACGGTCACCGAAGGCGGCGTAATCACCTACAcc > 6:274814/1‑149 (MQ=255) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg < 8:17576/149‑1 (MQ=17) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 3:80919/1‑149 (MQ=17) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCg > 8:298428/1‑149 (MQ=37) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGt > 2:283850/1‑149 (MQ=37) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCACCGGCTCATATTTCGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACAcc < 1:104396/149‑1 (MQ=11) cGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAc > 6:140981/1‑138 (MQ=17) cGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGa > 1:103438/1‑149 (MQ=17) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAc < 2:304988/149‑1 (MQ=37) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAc < 5:154493/137‑1 (MQ=37) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAcc > 6:304341/1‑149 (MQ=37) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAcc > 1:12002/1‑149 (MQ=37) agaACGCCACAGGCGGTAATTTCGAGCAACTGACACCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCACGTCGGTCAACGAAGGCGGCGTAAACACCTAAACCGTGAcc > 7:110367/1‑149 (MQ=11) gaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAccc < 2:36111/149‑1 (MQ=37) aaCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCt > 6:100957/1‑149 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTa < 4:226283/127‑1 (MQ=35) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTa > 3:226283/1‑127 (MQ=35) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 2:499/149‑1 (MQ=37) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAg < 1:307864/149‑1 (MQ=37) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAg < 2:241216/149‑1 (MQ=37) gCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCt > 5:250488/1‑149 (MQ=34) cGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTg < 5:100957/149‑1 (MQ=34) ttAATTTCGAGCAAATTACCACGAATCCGACC‑‑‑CCGGCTCAGACCACTATCAAAGACTCGGTCGATGCAACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGcc < 8:272060/148‑1 (MQ=11) gTAATTTCGAGCACCTGACCCCGACTCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGcc < 4:266564/149‑1 (MQ=21) gTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGcc > 3:126070/1‑149 (MQ=34) aTTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCa < 7:225508/148‑1 (MQ=34) aTTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAg > 7:73623/1‑149 (MQ=34) aTTTCGAGCAACTGACCCCGAACCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAg < 5:274814/149‑1 (MQ=21) tttCGAGCAACTGACCCCGAATACGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa > 3:59983/1‑134 (MQ=21) tttCGAGCAACGGACCCCGAATCCGACC‑‑‑CGGGCTCAGACCACGTTCAACGACTCGGTCGATGCCACCACCGCGACGCTGACGGCGTGCCCGTCGGTCAGCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 4:59983/134‑1 (MQ=11) ttCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGAc > 5:216260/1‑149 (MQ=34) gAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGt > 1:140250/1‑122 (MQ=35) gAGCAACTGACCCCGAACCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGcc > 4:284879/1‑149 (MQ=21) cAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGt < 5:304341/149‑1 (MQ=34) cTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa > 8:109688/1‑124 (MQ=35) tgcccccGAATGCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCTCCACCGCGACCTTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACAGCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAAcc < 7:208680/146‑1 (MQ=11) tGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAAcc > 6:112991/1‑149 (MQ=38) tGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGACGATGCCACAACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAAcc > 1:305813/1‑149 (MQ=255) cccGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa > 3:163425/1‑149 (MQ=39) cccGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa > 4:41446/1‑149 (MQ=39) gAATCCGACC‑‑‑CGGGCTCAGACAACGATCAACGACTCGGTCGATGCCTCCACCGCGACCCTGACGGCGAGCCCGTGGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCATGAGCAATCCTGCCCAGACGCGGGTAACCGTTAcgc < 4:125180/149‑3 (MQ=14) gAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTaca > 2:152437/1‑104 (MQ=35) ccGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAcc > 6:177771/1‑108 (MQ=35) aCC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa < 2:149693/139‑1 (MQ=37) aCC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa > 1:149693/1‑139 (MQ=37) cc‑‑‑ccGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTg > 5:41162/1‑137 (MQ=37) cc‑‑‑ccGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTg < 6:41162/137‑1 (MQ=37) cAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGt > 6:17470/1‑149 (MQ=37) ccccGACCAACCACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtcatc < 2:160556/146‑1 (MQ=255) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtcatca > 6:35525/1‑149 (MQ=40) gATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAAc > 3:134841/1‑117 (MQ=35) tCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGtt > 3:284936/1‑149 (MQ=255) tCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGtt < 2:147269/149‑1 (MQ=255) tCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGtt > 4:179299/1‑149 (MQ=255) aCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCaa > 2:61435/1‑91 (MQ=33) aCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCaa < 1:61435/91‑1 (MQ=33) aCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg < 8:76357/107‑1 (MQ=32) aCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg > 7:76357/1‑107 (MQ=32) aCGACTCGGGCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGaa < 8:223130/149‑1 (MQ=255) gACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGc < 5:17470/149‑1 (MQ=255) gACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGc > 3:74489/1‑149 (MQ=255) cTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCg < 1:167924/149‑1 (MQ=255) tCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCgg > 8:36516/1‑149 (MQ=255) ggTCGATGCCACCACCGCTACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCTGCGTAATCACCTACACCGTGACCATGAGCAATCCTGCCCAGACGCCGGTAAGCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCgg < 7:299962/147‑1 (MQ=255) gTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAg > 8:216303/1‑142 (MQ=255) gTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAg < 7:216303/142‑1 (MQ=255) gATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAAc < 7:34960/149‑1 (MQ=255) ccacccCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCa < 5:322261/148‑1 (MQ=255) ccaccaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCa < 4:3307/148‑1 (MQ=255) ccaccaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCa < 4:126070/148‑1 (MQ=255) ccaccaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAg < 5:35525/149‑1 (MQ=255) ccaccaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAg < 3:41446/149‑1 (MQ=255) caccacCGCTACCCTGACGGCGAGCCCGTGGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAgg < 2:305813/149‑1 (MQ=255) accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAggg > 2:116253/1‑149 (MQ=255) caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCa < 4:74489/149‑1 (MQ=255) cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAgg < 3:8071/113‑1 (MQ=38) cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAt > 4:155369/1‑149 (MQ=255) cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAAccc > 2:13415/1‑133 (MQ=255) tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc > 7:303505/1‑149 (MQ=255) tGACGCCGCGCCCCTCGGACACCCAAGCCCGCGTAATCACCTACACCGTGACCCTGAGCAATCCACCCCAGACGCCCGAAACCGTCACCCACTCCAACGGCCAGGTCATCACTGATGAAGCCGGCAAAACCCAGGGCAGCGTCCATTTc > 6:96931/1‑149 (MQ=14) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 4:68291/148‑1 (MQ=255) ttaCCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGAc < 1:116253/147‑1 (MQ=39) tCACCGAAGGCGGCGTAATCACCTACACCGTGACTCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGAc > 8:294017/1‑149 (MQ=255) cACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCCAATGACg > 2:82061/1‑149 (MQ=255) cGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTc > 7:89511/1‑148 (MQ=39) aaGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTac < 4:147219/149‑1 (MQ=39) gcggcgTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTacaa > 3:216819/1‑148 (MQ=38) ggcgTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTAcaacaa > 2:84663/1‑149 (MQ=37) | GTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACC‑‑‑CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGG > NC_002947/197033‑197325 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |