Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,235,839 | C→G | 10.0% | A317G (GCC→GGC) | uvrB → | uvrABC excinuclease protein B |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,235,839 | 0 | C | G | 10.0% | 140.4 / 8.1 | 50 | A317G (GCC→GGC) | uvrB | uvrABC excinuclease protein B |
Reads supporting (aligned to +/- strand): ref base C (21/24); new base G (2/3); total (23/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.41e-01 |
GAGCGTCTGGAGTACCTGCACAAGGCCAACAAGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATCACACGTCAGCGTTCCGCAGGTCGGCGCCATGTACAAGGGCGACCGTTCACGCAAGGAGACCCTGGTCGAGTACGGCTTCC > NC_002947/2235691‑2235985 | gAGCGTCTGGAGTACCTGCACAAGGCCAACAAGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCccggc > 4:215963/1‑149 (MQ=255) gCGTCTGGAGTACCTGCACAAGGCCAACAAGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCccggccg > 8:39685/1‑149 (MQ=255) gCGTCTGGAGTACCTGCACAAGGCCAACAAGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCccggccg < 7:101739/149‑1 (MQ=255) tCTGGAGTACCTGCACAAGGCCAACAAGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCgggg < 7:130739/149‑1 (MQ=255) ggAGTACCTGCACAAGGCCAACAAGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGgcgc > 7:146189/1‑149 (MQ=255) gAGTACCTGCACAAGGCCAACAAGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGcgcc > 5:241932/1‑149 (MQ=255) gAGTACCTGCACAAGGCCAACAAGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGcgcc < 6:241932/149‑1 (MQ=255) aGTACCTGCACAAGGCCAACAAGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCCGGCCGGGcgccc < 6:281069/149‑2 (MQ=255) cTGCACAAGGCCAACAAGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCCGGCGCCCCGGCCGGGcgcccggaca < 2:306352/149‑7 (MQ=255) gCACAAGGCCAACAAGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCa > 3:215056/1‑149 (MQ=255) cacaAGGCCAACAAGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCAc > 8:112151/1‑149 (MQ=255) acaAGGCCAACAAGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACACGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCAcc > 3:258696/1‑149 (MQ=255) caAGGCCAACAAGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCAccc > 2:28418/1‑149 (MQ=255) aaGGCCAACAAGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCt < 3:183634/149‑1 (MQ=255) ggCCAACAAGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGt < 3:215963/149‑1 (MQ=255) gCCAACAAGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTa < 5:83301/149‑1 (MQ=255) gcaacaaGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTAc > 2:263984/2‑149 (MQ=255) caacaaGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTAc > 6:265275/1‑148 (MQ=255) aaGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCCGGCGCCCCGGCCGGGcgcccg > 3:141428/1‑128 (MQ=255) aaGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCCGGCGCCCCGGCCGGGcgcccg < 4:141428/130‑3 (MQ=255) aGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTAc < 1:305716/149‑1 (MQ=255) gTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGACGCCGCCGCCCACCCTGTACGATTACCTgc < 1:28418/148‑1 (MQ=255) cAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATgc > 4:307044/1‑149 (MQ=255) gCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATgcgc < 4:215056/149‑1 (MQ=255) gAGCAACGCACCCGCTTCGTTCTGGCGATTATCCTCGAGGTGGGATACTGCAACGGCATCTAAAACTACTCGGGTTACCTGTCCGGGCGCCGGGCGGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGt < 4:307422/149‑1 (MQ=255) gAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGTCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGctgctg < 4:258696/147‑1 (MQ=255) gAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGctgctg < 8:233686/147‑1 (MQ=255) gAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGt > 7:261895/1‑149 (MQ=255) aGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTg < 1:203754/149‑1 (MQ=255) gCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGa < 7:112151/149‑1 (MQ=255) cGATCTGGAGATGATCCTGGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCTCCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACTAATCacac < 2:35252/148‑1 (MQ=255) tCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATCACACGt > 8:2766/1‑147 (MQ=255) tgagCCTCGAGCTGGGCTACTGCACCGGAATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATCACACGTCAGCGTTcc < 8:146189/148‑1 (MQ=255) gatCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATCACACGTCAGCGTTCCg > 3:88710/1‑148 (MQ=255) ggCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATCACACGTCAGCGTTCCGCAGGTCGGCGcc < 4:88710/147‑1 (MQ=255) gCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATCACACGTCAGCGTTCCGCAGGTCGGCGCCATg > 6:245428/1‑149 (MQ=255) cAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGGCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATgcg < 1:50761/91‑1 (MQ=255) cAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATCACACGTCAGCGTTCCGCAGGTCGGCGCCATGTACAAgg < 7:2766/149‑1 (MQ=255) cAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATCACACGTCAGCGTTCCGCAGGTCGGCGCCATGTACAAg < 5:245428/148‑1 (MQ=255) cAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCCCCGCCCCCCACCCTCTACGATTACCTGCCGCCCGATgcg > 2:50761/1‑91 (MQ=255) aTCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATCACACGTCAGCGTTCCGCAGGTCGGCGCCATGTACAAGGGCGACCg > 8:81126/1‑149 (MQ=255) cGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATCACACGTCAGCGTTCCGCAGGTCGGCGCCATGTACAAGGGCGACCGt > 5:152057/1‑148 (MQ=255) aaaCTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATCACACGTCAGCGTTCCGCAGGTCGGCGCCATGTACAAGGGCGACCGTTCAc > 6:229074/1‑149 (MQ=255) aaaCTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATCACACGTCAGCGTTCCGCAGGTCGGCGCCATGTACAAGGGCGACCGTTCAc > 5:65011/1‑149 (MQ=255) ctCGCGTTACCTGTCCGGGCGCCGGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATCACACGTCAGCGTTCCGCAGGTCGGCGCCATGTACAAGGGCGACCGTTCACGCAAg < 8:261895/148‑1 (MQ=255) ctCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATcac > 2:225024/1‑95 (MQ=255) ctCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATcac < 1:225024/95‑1 (MQ=255) aCCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATCACACGTCAGCGTTCCGCAGGTCGGCGCCATGTACAAGGGCGACCGTTCACGCAAGGAGACCCTg > 7:42199/1‑149 (MQ=255) aCCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATCACACGTCAGCGTTCCGCAGGTCGGCGCCATGTACAAGGGCGACCGTTCACGCAAGGAGACCCTg > 8:16424/1‑149 (MQ=255) ccTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATCACACGTCAGCGTTCCGCAGGTCGGCGCCATGTACAAGGGCGACCGTTCACGCAAGGAGACCCTg < 7:39685/148‑1 (MQ=255) gggCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATCACACGTCAGCGTTCCGCAGGTCGGCGCCATGTACAAGGGCGACCGTTCACGCAAGGAGACCCTGGTCGAGTa < 7:16424/149‑1 (MQ=255) gcgcCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGGGCTGCTGGTGATCGACGAATCACACGTCAGCGTTCCGCAGGTCGGCGCCATGTACAAGGGCGACCGTTCACGCAAGGAGACCCTGGTCGAGTACg < 1:263984/149‑1 (MQ=255) gcgcCCCGGCCGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATCACACGTCAGCGTTCCGCAGGTCGGCGCCATGTACAAGGGCGACCGTTCACGCAAGGAGACCCTGGTCGAGTACg > 6:193143/1‑149 (MQ=255) ccggccggGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATCACACGTCAGCGTTCCGCAGGTCGGCGCCATGTACAAGGGCGACCGTTCACGCAAGGAGACCCTGGTCGAGTACGGCtt < 3:307044/149‑1 (MQ=255) ggccggGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATCACACGTCAGCGTTCCGCAGGTCGGCGCCATGTACAAGGGCGACCGTTCACGCAAGGAGACCCTGGTCGAGTACGGCTTcc > 6:295194/1‑149 (MQ=255) | GAGCGTCTGGAGTACCTGCACAAGGCCAACAAGCTGGTCGAAGCGCAGCGTCTGGAGCAACGCACCCGCTTCGATCTGGAGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAAAACTACTCGCGTTACCTGTCCGGGCGCCCGGCCGGGGCGCCGCCGCCCACCCTGTACGATTACCTGCCGCCCGATGCGCTGCTGGTGATCGACGAATCACACGTCAGCGTTCCGCAGGTCGGCGCCATGTACAAGGGCGACCGTTCACGCAAGGAGACCCTGGTCGAGTACGGCTTCC > NC_002947/2235691‑2235985 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |