| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,551 | C→G | 12.2% | T1019T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,551 | 0 | C | G | 12.2% | 281.5 / 26.6 | 112 | T1019T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (45/52); new base G (7/7); total (53/59) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.59e-01 | |||||||||||
Only 100 of 113 total aligned reads displayed.
CACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGG > NC_002947/197407‑197699 | cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTa > 8:54430/1‑149 (MQ=37)cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTa < 6:5040/149‑1 (MQ=37)cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTa > 2:233061/1‑149 (MQ=37)cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGACCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCAtt > 5:5040/1‑148 (MQ=37) aCGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCAGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTAc < 7:191203/149‑1 (MQ=37) gATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCg < 6:268552/149‑1 (MQ=37) aTCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑t < 7:77880/149‑1 (MQ=37) aaCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGACCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCAAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCAATACCG‑‑TTg > 1:118367/1‑148 (MQ=255) aCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCCCCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTg > 5:231365/1‑147 (MQ=37) aCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGaa < 7:241493/149‑1 (MQ=37) aCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGaa < 3:272566/149‑1 (MQ=37) cTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCGGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCCATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCg < 2:292494/149‑1 (MQ=255) cTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCg > 2:225331/1‑149 (MQ=37) ggTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGc < 8:123048/148‑1 (MQ=37) gTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCATGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCaa < 7:183749/149‑1 (MQ=37) gTCGATGCCACCACAGCGACCCTGACGGCGATCCCGTCGGTCACCGAAGGCGGCGTTATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCaa < 2:118367/149‑1 (MQ=255) gCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGAcc > 8:35516/1‑147 (MQ=37) ccaccaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCa < 6:231365/148‑1 (MQ=37) caccacCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAgg > 3:138349/1‑149 (MQ=37) accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCATGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAggg < 1:233061/149‑1 (MQ=37) ccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCaa < 3:73611/139‑1 (MQ=37) ccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCATGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCaa > 4:73611/1‑139 (MQ=37) caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGAGCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAggg > 7:170187/1‑147 (MQ=37) cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGAAAGCACCAGGGCAGCg > 6:263612/1‑149 (MQ=255) cgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTc < 3:98470/149‑1 (MQ=37) gACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑tt > 7:129859/1‑121 (MQ=38) gACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑tt < 8:129859/121‑1 (MQ=38) tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTc > 7:262446/1‑149 (MQ=37) gACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTc > 2:96446/1‑148 (MQ=37) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTcc < 6:143677/148‑1 (MQ=37) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTcc < 2:288094/148‑1 (MQ=37) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCa < 4:133431/149‑1 (MQ=37) gCGAGCCCTTCGGTCACCGAAGGCGGCGTGATCCCCTACACCGTGATCCTGAGCAATGCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGTCAAGACCCAGGGCAGCGTCGATTTCCAGAc < 3:191126/149‑1 (MQ=255) ccGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTc > 6:285230/1‑138 (MQ=37) ccGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTc < 5:285230/138‑1 (MQ=37) ggTCACCTAAGGCGGCGTGATCACCTACACCGTTATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATg < 5:263612/149‑1 (MQ=255) ggTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAt < 6:24330/148‑1 (MQ=37) tCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc < 5:304417/149‑1 (MQ=37) aCCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGTCGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAAGCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACg < 7:261282/148‑1 (MQ=255) cGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACAATGCCCAACGGAAAAAAAATAACCT‑‑TTGAAGCAGTCAAGAACAAGGGCAGCGTCGATTTCAAGAAAAAGGAGAATGACGTc > 4:252330/1‑148 (MQ=2) cGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCa < 2:162476/111‑1 (MQ=12) cGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACAG‑‑TTGAAGCCGGCAAGACCCa > 1:162476/1‑111 (MQ=255) aaGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTac < 7:35516/149‑1 (MQ=37) aGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTac > 5:301524/1‑148 (MQ=37) gcggcgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGAtt < 7:203374/120‑1 (MQ=39) gcggcgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCAATACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGAtt > 8:203374/1‑120 (MQ=255) cgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCGCCATGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTAcaacaa < 1:96446/149‑1 (MQ=255) cgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACg < 6:223122/149‑1 (MQ=37) cgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACg < 5:82951/149‑1 (MQ=37) tGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGt < 2:96417/149‑1 (MQ=37) aTCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 7:69762/149‑1 (MQ=37) cACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGGTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 1:71202/1‑147 (MQ=255) cACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 2:71202/146‑1 (MQ=37) aCCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 8:170187/148‑1 (MQ=37) acCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAg > 7:76663/1‑149 (MQ=21) cGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 8:113270/137‑1 (MQ=37) cGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 7:113270/1‑137 (MQ=37) cGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCg > 5:240000/1‑149 (MQ=39) cTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc < 6:110236/114‑1 (MQ=35) cTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc > 5:110236/1‑114 (MQ=35) tgcgCAACCCTGCCCAGACGCCGGTGCCC‑GTGACCCTGTCCAACGGCCAAACGATTACCG‑‑TTGAAGCCGGCAACCCCCAGGGCAGCGTCGACTTCCCGCCCCCGGCGCATGACGGCTACAACAACGGTTCGCCTGTCAGCGGCACCATc > 1:193594/4‑149 (MQ=11) tGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATc > 3:303249/1‑149 (MQ=17) aGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCg < 1:225331/148‑1 (MQ=17) aGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTACAGCCCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCCCCCTCga > 6:24501/1‑149 (MQ=11) gCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCgag < 5:313145/149‑1 (MQ=37) ccggCCCAGACGCCGGTACCC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGc < 4:81570/146‑1 (MQ=255) cTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCAGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCAGGCGAATGACGTCTACAACAACGGTTCTACTGTCAGCGTCACCAACGAGAACGc > 3:191321/1‑148 (MQ=255) cccAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCca > 6:282011/1‑147 (MQ=17) cccAGACGCCGGTAACC‑GTGACCCTATCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCca > 2:142101/1‑147 (MQ=17) ccAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAg > 2:11405/1‑149 (MQ=37) cAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAgg < 8:262446/149‑1 (MQ=37) aGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGc > 4:181546/1‑125 (MQ=17) aCGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCgg > 2:183455/1‑149 (MQ=37) cGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCa < 8:235504/61‑1 (MQ=40) cGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCa > 7:235504/1‑61 (MQ=40) gCCGGTGACC‑GTGACCCTGTCCAACGGCCAAACGATTACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGt > 5:311867/1‑148 (MQ=255) gTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCATGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCcaca < 5:272950/138‑1 (MQ=37) gTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTAcaacaa < 6:178793/101‑1 (MQ=35) gTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCcaca > 6:272950/1‑138 (MQ=37) tgaCC‑GTGACCCTGTCCAACGGCCAAACGATTACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 8:3833/147‑1 (MQ=255) tgaCC‑GTGACCCTGTCCAACGGCCAAACGATTACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 6:222263/147‑1 (MQ=255) tAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc > 8:136955/1‑149 (MQ=35) aCC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCg < 1:11405/148‑1 (MQ=34) cc‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg > 4:277961/1‑149 (MQ=33) cc‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg > 2:76852/1‑149 (MQ=33) c‑GTGACCCTGTCCAACGGCCAAACGATTACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGc < 6:161494/149‑1 (MQ=12) c‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTaa < 5:108699/141‑1 (MQ=32) aCCCTGTCCAACGGCCAAACGATTACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc < 5:201017/148‑1 (MQ=12) tGTCCAACGGCCAAACGATTACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcc > 6:90396/1‑149 (MQ=12) aaCGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAAc > 1:284259/1‑114 (MQ=32) gtccAAACCAATACCG‑‑TTGAAGCCTGCAAGACCCAGGGCATCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGTCGGTAATTTCGAGCAACTGAcc < 5:68667/139‑1 (MQ=255) ggCCAAACGATTACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGGTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAccc < 8:293950/149‑1 (MQ=255) ggCCAAACCATTACAG‑‑TTGAAGACGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCTACTGTCAGCGTCACCATCGAGAACGCAACAGGCGGTAATTTCGAGCACCTGAcc > 6:68667/1‑141 (MQ=11) gCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt > 5:34202/1‑89 (MQ=31) gCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt < 6:34202/89‑1 (MQ=31) ccAAACGATTACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGaa > 6:304691/1‑144 (MQ=12) cAAACGATTACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGATCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAc > 6:113331/1‑149 (MQ=255) aaaCGATTACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAcc > 2:55759/1‑148 (MQ=255) aaaCCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGATTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCACCTGACCCCGAAAccgccg > 4:69192/1‑149 (MQ=11) cATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCgg < 5:313208/149‑1 (MQ=37) | CACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGG > NC_002947/197407‑197699 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |